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Sequencing techniques

SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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Evaluation of nanopore sequencing for increasing accessibility of eDNA studies in biodiverse countries

Daniel Gygax, Sabina Ramirez, Moses Chibesa, Twakundine Simpamba, Michael Riffel, Tom Riffel, Amrita Srivathsan, Reindert Nijland, Lara Urban

published 16 Oct 2025

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Identification of genes that differentiate Mannheimia haemolytica genotypes 1 and 2 using a pangenome approach

Darien Deschner, Janet E. Hill

published 16 Oct 2025

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Evaluating topological variability in Neodermata phylogenies using mitochondrial and ribosomal gene markers

Víctor Hugo Caña-Bozada, Geormery Belén Mera-Loor, David I. Hernández-Mena, Jean-Lou Justine, Marta Álvarez-Presas

published 15 Oct 2025

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Exposure to the organochlorine pesticide cis-chlordane induces ALS-like mitochondrial perturbations in stem cell-derived motor neurons

Oliver Clackson, Muhammad Reza Hamid, Adithi Wijesekera, Daniel Kulick, Alison Linsley O’Neil

published 14 Oct 2025

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A study of RNA splicing and protein expression in the living human brain

Brian H. Kopell, Deepak A. Kaji, Lora E. Liharska, Eric Vornholt, Anina Lund, Alice Hashemi, Ryan C. Thompson, Jessica S. Johnson, Nicole Bussola, Esther Cheng, You Jeong Park, Punit Shah, Weiping Ma, Richard Searfoss, Gregory M. Miller, Nischal Mahaveer Chand, Jack Humphrey, Lillian Wilkins, Kimia Ziafat, Hannah Silk, Lisa M. Linares, Brendan Sullivan, Claudia Feng, Vanessa Cohen, Prashant Kota, Emily Moya, Marysia-Kolbe Rieder, Girish N. Nadkarni, Michael S. Breen, Joseph Scarpa, Niven R. Narain, Pei Wang, Michael A. Kiebish, Eric E. Schadt, Noam D. Beckmann, Alexander W. Charney

published 09 Oct 2025

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Detection of leukemia gene fusions on DNA-level through targeted Next-Generation Sequencing

Bin Chen, Zhihui Gao, Long Chen, Hong Zhang, Yani Lin, Jing Li

published 09 Oct 2025

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Integrative transcriptomics analysis reveals the metabolic regulatory functions of lncRNA in the livers of yak at different age stages

Hongsen Fu, Wei Xia, Fang Fu, Jun Yi, Wei Wang, Yong Wei, Li Wang

published 08 Oct 2025

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High throughput transcriptomics analysis of ovine mammary epithelial cells stimulated with Staphylococcus aureus in vitro

Saif Adil Abbood Al-Janabi, Ghulam Asghar Sajid, Sidra Zeb, Muhammad Jasim Uddin, Mehmet Ulas Cinar

published 30 Sep 2025

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In vitro and molecular modeling insights into α-amylase inhibition by tamarind seed-derived trypsin inhibitor: Implications for hyperglycemic control

Larissa Aida Lemos de Souza, Caio Patrício de Souza Sena, Felipe Carlos de Macêdo Oliveira, Raphael Paschoal Serquiz, Ana Júlia Felipe Camelo Aguiar, Amanda Maria de Souza Nascimento, Ana Karoliny Xavier de Gois Silva, Rose de Paiva Chaves, Anna Beatriz Santana Luz, Thaís Souza Passos, Davi Serradella Vieira, Ana Heloneida de Araujo Morais

published 29 Sep 2025

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Exosomal miR-320b regulates cardiomyocyte FOXM1 expression and may serve as an early-stage compensatory mechanism in obstructive sleep apnea

Wan-yu Wang, Zhi-jia Chen, Ya-juan Lai, Lin-lin Guo, Ao Xiong, Zhen-yong Huang, Xiang-yang Yao, Yi-ming Zeng

published 26 Sep 2025

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Regulatory influence of α-Pinene on MATN3 expression in hepatocellular carcinoma: Extending to pan-cancer analysis

Binyu Zhao, Wenliang Qiu, Wenhui Xu, Lixin Wu, Jiayin Zhao, Haocheng Zhao, Fengxiang Wei, Bing Qiu

published 26 Sep 2025

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A circulating microRNA panel enhances the diagnosis of cholangiocarcinoma

Aye Myat Mon, Kitti Intuyod, Sirinapha Klungsaeng, Apinya Jusakul, Arunnee Sangka, Vor Luvira, Chawalit Pairojkul, Tullayakorn Plengsuriyakarn, Kesara Na-Bangchang, Somchai Pinlaor, Porntip Pinlaor

published 25 Sep 2025

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