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Sequencing techniques

An improved nuclei isolation protocol from leaf tissue for single-cell transcriptomics

Gabriela Madrid, Gabriel Angelo Saraiva Raimundo, Fabian Andres Reyes, Edgard Augusto de Toledo Picoli, Marcio F. R. Resende Jr., Kelly M. Balmant

published 10 Sep 2025

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Unveiling the mechanism of Pogostemon cablin (Blanco) Benth in treating heat illnesses via network pharmacology and molecular simulation

Xiang Li, Sishi Jiang, Haili Li, Shilin Li, Yingchun Hu

published 08 Sep 2025

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Exploring extreme environments in Türkiye for novel P450s through metagenomic analysis

Hande Mumcu, Julian Zaugg, Irem Keles, Aycan Kayrav, Nurgul Balci, David R. Nelson, Philip Hugenholtz, Elizabeth M. J. Gillam, Nevin Gul Karaguler

published 08 Sep 2025

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A novel mitovirus associated with the fungal entomopathogen Zoophthora radicans

Meaghan J. Adler, McKayla M. Martin, Paula Rozo-Lopez, Benjamin J. Parker

published 05 Sep 2025

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Transcriptomic changes associated with infection of Nicotiana benthamiana plants with tomato ringspot virus (genus Nepovirus) during the acute symptomatic stage and after symptom recovery

Dinesh Babu Paudel, Ana Priscilla Montenegro Alonso, Joan Chisholm, Huogen Xiao, Hélène Sanfaçon

published 02 Sep 2025

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Identification of BOLD engine deficiencies and suggestions for improvement based on a curated Tachina (Diptera) record set

Frederik Stein, Oliver Gailing

published 29 Aug 2025

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Modular and cloud-based bioinformatics pipelines for high-confidence biomarker detection in cancer immunotherapy clinical trials

Cu Nguyen, Trinh Nguyen, Gloria Trivitt, Brian Capaldo, Chunhua Yan, Qingrong Chen, Nicholas Renzette, Umit Topaloglu, Daoud Meerzaman

published 26 Aug 2025

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Whole-Genome sequencing of Chikungunya Virus (CHIKV) from Pakistan: Detection of the East/Central/South African (ECSA) genotype during the 2024 outbreak in Mansehra

Massab Umair, Muhammad Yasir, Zunera Jamal, Rabia Hakim, Syed Yawar Saeed, Muhammad Salman, Azhar Iqbal, Muhammad Qasim Khan, Faisal Khanzada, Yusra Javed

published 26 Aug 2025

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Diagnostic accuracy of circulating tumor DNA for detection of ALK rearrangement in lung cancer: A systematic review and meta-analysis of 14 studies

Jiantong Sun, Lan Yang, Dan Liu, Hui Xue, Panwen Tian, Lei Li

published 25 Aug 2025

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Transcriptome sequencing reveals the evolutionary histories and gene expression evolution in two related Pagurus species

Zakea Sultana, Isaac Adeyemi Babarinde, Masafumi Nozawa, Kazuho Ikeo, Akira Asakura, Tomoyuki Nakano

published 20 Aug 2025

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Future Sequon Finder - A novel approach for predicting future N-linked glycosylation sequon locations on viral surface proteins

Shane P. Bryan, Martin S. Zand

published 14 Aug 2025

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Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, Ginger Geiger, Daniel R. Perez, Daniela S. Rajao

published 13 Aug 2025

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Characterization of an unusual carlavirus-like RNA from papaya (Carica papaya) lacking essential genes

Milenka Vera, Raúl Cifuentes, Ronan Keener, Neil Olszewski, Robert A. Alvarez-Quinto, Diego F. Quito-Avila

published 08 Aug 2025

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