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Sequencing techniques

Single gene targeted nanopore sequencing enables simultaneous identification and antimicrobial resistance detection of sexually transmitted infections

Liqing Zhou, Andrea Lopez Rodas, Luz Marina Llangarí, Natalia Romero Sandoval, Philip Cooper, Syed Tariq Sadiq

published 21 Jan 2022

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Linking protein structural and functional change to mutation using amino acid networks

Cristina Sotomayor-Vivas, Enrique Hernández-Lemus, Rodrigo Dorantes-Gilardi

published 21 Jan 2022

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BIOME-Preserve: A novel storage and transport medium for preserving anaerobic microbiota samples for culture recovery

Embriette R. Hyde, Hiram Lozano, Steven Cox

published 21 Jan 2022

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Transcriptomic profiling suggests candidate molecular responses to waterlogging in cassava

Min Cao, Linling Zheng, Junyi Li, Yiming Mao, Rui Zhang, Xiaolei Niu, Mengting Geng, Xiaofei Zhang, Wei Huang, Kai Luo, Yinhua Chen

published 21 Jan 2022

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Genomic surveillance of SARS-CoV-2 Spike gene by sanger sequencing

Tiago Souza Salles, Andrea Cony Cavalcanti, Fábio Burack da Costa, Vanessa Zaquieu Dias, Leandro Magalhães de Souza, Marcelo Damião Ferreira de Meneses, José Antônio Suzano da Silva, Cinthya Domingues Amaral, Jhonatan Ramos Felix, Duleide Alves Pereira, Stefanella Boatto, Maria Angélica Arpon Marandino Guimarães, Davis Fernandes Ferreira, Renata Campos Azevedo

published 20 Jan 2022

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Genomic surveillance of SARS-CoV-2 in the state of Delaware reveals tremendous genomic diversity

Karl R. Franke, Robert Isett, Alan Robbins, Carrie Paquette-Straub, Craig A. Shapiro, Mary M. Lee, Erin L. Crowgey

published 19 Jan 2022

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Complete sequences of epidermin and nukacin encoding plasmids from oral-derived Staphylococcus epidermidis and their antibacterial activity

Kenta Nakazono, Mi Nguyen-Tra Le, Miki Kawada-Matsuo, Noy Kimheang, Junzo Hisatsune, Yuichi Oogai, Masanobu Nakata, Norifumi Nakamura, Motoyuki Sugai, Hitoshi Komatsuzawa

published 18 Jan 2022

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Confounds of using the unc-58 selection marker highlights the importance of genotyping co-CRISPR genes

Helena Rawsthorne-Manning, Fernando Calahorro, Patricia G. Izquierdo, Philippe Tardy, Thomas Boulin, Lindy Holden-Dye, Vincent O’Connor, James Dillon

published 18 Jan 2022

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Evaluation of a parasite-density based pooled targeted amplicon deep sequencing (TADS) method for molecular surveillance of Plasmodium falciparum drug resistance genes in Haiti

Swarnali Louha, Camelia Herman, Mansi Gupta, Dhruviben Patel, Julia Kelley, Je-Hoon M. OH, Janani Guru, Jean F. Lemoine, Michelle A. Chang, Udhayakumar Venkatachalam, Eric Rogier, Eldin Talundzic

published 14 Jan 2022

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Longitudinal variability in the urinary microbiota of healthy premenopausal women and the relation to neighboring microbial communities: A pilot study

Lena M. Biehl, Fedja Farowski, Catharina Hilpert, Angela Nowag, Anne Kretzschmar, Nathalie Jazmati, Anastasia Tsakmaklis, Imke Wieters, Yascha Khodamoradi, Hilmar Wisplinghoff, Maria J. G. T. Vehreschild

published 14 Jan 2022

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Evolutionary paths to macrolide resistance in a Neisseria commensal converge on ribosomal genes through short sequence duplications

Jordan C. Raisman, Michael A. Fiore, Lucille Tomin, Joseph K. O. Adjei, Virginia X. Aswad, Jonathan Chu, Christina J. Domondon, Ben A. Donahue, Claudia A. Masciotti, Connor G. McGrath, Jo Melita, Paul A. Podbielski, Madelyn R. Schreiner, Lauren J. Trumpore, Peter C. Wengert, Emalee A. Wrightstone, André O. Hudson, Crista B. Wadsworth

published 13 Jan 2022

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Effect of short-term hindlimb immobilization on skeletal muscle atrophy and the transcriptome in a low compared with high responder to endurance training model

Jamie-Lee M. Thompson, Daniel W. D. West, Thomas M. Doering, Boris P. Budiono, Sarah J. Lessard, Lauren G. Koch, Steven L. Britton, Nuala M. Byrne, Matthew A. Brown, Kevin J. Ashton, Vernon G. Coffey

published 13 Jan 2022

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A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

Carlos Arana, Chaoying Liang, Matthew Brock, Bo Zhang, Jinchun Zhou, Li Chen, Brandi Cantarel, Jeffrey SoRelle, Lora V. Hooper, Prithvi Raj

published 13 Jan 2022

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