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Sequencing techniques

CView: A network based tool for enhanced alignment visualization

Raquel Linheiro, Stephen Sabatino, Diana Lobo, John Archer

published 13 Jun 2022

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Combining DNA and HPTLC profiles to differentiate a pain relief herb, Mallotus repandus, from plants sharing the same common name, “Kho-Khlan”

Kannika Thongkhao, Chayapol Tungphatthong, Vipawee Pichetkun, Suthathip Gaewtongliam, Worakorn Wiwatcharakornkul, Suchada Sukrong

published 09 Jun 2022

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Investigating CRISPR/Cas9 gene drive for production of disease-preventing prion gene alleles

Andrew R. Castle, Serene Wohlgemuth, Luis Arce, David Westaway

published 07 Jun 2022

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Vitamin D-mediated effects on airway innate immunity in vitro

Emma M. Stapleton, Kathy Keck, Robert Windisch, Mallory R. Stroik, Andrew L. Thurman, Joseph Zabner, Ian M. Thornell, Alejandro A. Pezzulo, Julia Klesney-Tait, Alejandro P. Comellas

published 06 Jun 2022

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Characterization of the genome and silk-gland transcriptomes of Darwin’s bark spider (Caerostris darwini)

Paul L. Babb, Matjaž Gregorič, Nicholas F. Lahens, David N. Nicholson, Cheryl Y. Hayashi, Linden Higgins, Matjaž Kuntner, Ingi Agnarsson, Benjamin F. Voight

published 06 Jun 2022

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CI-SpliceAI—Improving machine learning predictions of disease causing splicing variants using curated alternative splice sites

Yaron Strauch, Jenny Lord, Mahesan Niranjan, Diana Baralle

published 03 Jun 2022

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Super high-resolution single-molecule sequence-based typing of HLA class I alleles in HIV-1 infected individuals in Ghana

Nicholas I. Nii-Trebi, Saori Matsuoka, Ai Kawana-Tachikawa, Evelyn Y. Bonney, Christopher Z. Abana, Sampson B. Ofori, Taketoshi Mizutani, Aya Ishizaka, Teiichiro Shiino, Jun Ohashi, Taeko K. Naruse, Akinori Kimura, Hiroshi Kiyono, Koichi Ishikawa, William K. Ampofo, Tetsuro Matano

published 02 Jun 2022

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A Borrelia burgdorferi outer surface protein C (OspC) genotyping method using Luminex technology

Patrick Pearson, Olivia Skaltsis, Chu-Yuan Luo, Guang Xu, Zachary Oppler, Dustin Brisson, Stephen M. Rich

published 01 Jun 2022

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Machine learning predicts translation initiation sites in neurologic diseases with nucleotide repeat expansions

Alec C. Gleason, Ghanashyam Ghadge, Jin Chen, Yoshifumi Sonobe, Raymond P. Roos

published 01 Jun 2022

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A preliminary, observational study using whole-blood RNA sequencing reveals differential expression of inflammatory and bone markers post-implantation of percutaneous osseointegrated prostheses

Andrew Miller, Sujee Jeyapalina, Jay Agarwal, Mitchell Mansel, James Peter Beck

published 26 May 2022

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Use of CRISPR/Cas9 with homology-directed repair to silence the human topoisomerase IIα intron-19 5’ splice site: Generation of etoposide resistance in human leukemia K562 cells

Victor A. Hernandez, Jessika Carvajal-Moreno, Xinyi Wang, Maciej Pietrzak, Jack C. Yalowich, Terry S. Elton

published 26 May 2022

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Circulating extracellular vesicles exhibit a differential miRNA profile in gestational diabetes mellitus pregnancies

Shanthie Thamotharan, Shubhamoy Ghosh, Laura James-Allan, Margarida Y. Y. Lei, Carla Janzen, Sherin U. Devaskar

published 25 May 2022

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Diverse human and bat-like rotavirus G3 strains circulating in suburban Bangkok

Fajar Budi Lestari, Sompong Vongpunsawad, Yong Poovorawan

published 24 May 2022

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