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Sequencing techniques

Comparison of whole transcriptome sequencing of fresh, frozen, and formalin-fixed, paraffin-embedded cardiac tissue

Stine Bøttcher Jacobsen, Jacob Tfelt-Hansen, Morten Holdgaard Smerup, Jeppe Dyrberg Andersen, Niels Morling

published 29 Mar 2023

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Transcriptomes reveal microRNAs and mRNAs in different photoperiods influencing cashmere growth in goat

Bin Liu, Ruoyang Zhao, Tiecheng Wu, Yuejun Ma, Yulin Gao, Yahan Wu, Bayasihuliang Hao, Jun Yin, Yurong Li

published 17 Mar 2023

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Feline myocardial transcriptome in health and in hypertrophic cardiomyopathy—A translational animal model for human disease

Jessica Joshua, Jeff Caswell, M. Lynne O’Sullivan, Geoffrey Wood, Sonja Fonfara

published 16 Mar 2023

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Clonal isolates of Treponema pallidum subsp. pallidum Nichols provide evidence for the occurrence of microevolution during experimental rabbit infection and in vitro culture

Diane G. Edmondson, Bridget D. De Lay, Blake M. Hanson, Lindsay E. Kowis, Steven J. Norris

published 14 Mar 2023

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Target-enriched enzymatic methyl sequencing: Flexible, scalable and inexpensive hybridization capture for quantifying DNA methylation

Dustin R. Rubenstein, Joseph Solomon

published 09 Mar 2023

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Standardization of flow cytometry and cell sorting to enable a transcriptomic analysis in a multi-site sarcoidosis study

Roman E. Magallon, Laura D. Harmacek, Nicholas K. Arger, Pineet Grewal, Linda Powers, Brenda R. Werner, Briana Q. Barkes, Li Li, Kristyn MacPhail, May Gillespie, Elizabeth K. White, Sarah E. Collins, Talyor Brown, Jessica Cardenas, Edward S. Chen, Lisa A. Maier, Sonia M. Leach, Nabeel Y. Hamzeh, Laura L. Koth, Brian P. O’Connor

published 09 Mar 2023

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Therapeutic implications of transcriptomics in head and neck cancer patient-derived xenografts

Rex H. Lee, Ritu Roy, Hua Li, Aaron Hechmer, Tian Ran Zhu, Adila Izgutdina, Adam B. Olshen, Daniel E. Johnson, Jennifer R. Grandis

published 01 Mar 2023

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RNA sequencing-based transcriptome analysis of granulosa cells from follicular fluid: Genes involved in embryo quality during in vitro fertilization and embryo transfer

Eun Jeong Yu, Won Yun Choi, Mi Seon Park, Jin Hee Eum, Dong Ryul Lee, Woo Sik Lee, Sang Woo Lyu, Sook Young Yoon

published 01 Mar 2023

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Role of ribosome recycling factor in natural termination and translational coupling as a ribosome releasing factor

Yoshio Inokuchi, Fabio Quaglia, Akikazu Hirashima, Yoshihiro Yamamoto, Hideko Kaji, Akira Kaji

published 24 Feb 2023

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Preparation of noninfectious scRNAseq samples from SARS-CoV-2-infected epithelial cells

Raven M. Osborn, Justin Leach, Michelle Zanche, John M. Ashton, ChinYi Chu, Juilee Thakar, Stephen Dewhurst, Sonia Rosenberger, Martin Pavelka, Gloria S. Pryhuber, Thomas J. Mariani, Christopher S. Anderson

published 24 Feb 2023

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GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, Andrew Gorzalski, Kevin Libuit, Vici Varghese, Tyler Lloyd, Farid Tadros, Tyler Arsimendi, Eileen Wagner, Craig Stephens, Joel Sevinsky, David Hess, Mark Pandori

published 16 Feb 2023

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Patients with abdominal aortic aneurysms have reduced levels of microRNA 122-5p in circulating exosomes

Jose L. Lopez, Joel L. Ramirez, Tuan Anh Phu, Phat Duong, Laura Bouchareychas, Christina R. Kuhrau, Pei-Yu Lin, Walter L. Eckalbar, Andrea J. Barczak, Joshua D. Rudolph, Lenka Maliskova, Michael S. Conte, Shant M. Vartanian, Robert L. Raffai, Adam Z. Oskowitz

published 14 Feb 2023

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Fucosyltransferase 8 (FUT8) and core fucose expression in oxidative stress response

Yuki M. Kyunai, Mika Sakamoto, Mayuko Koreishi, Yoshio Tsujino, Ayano Satoh

published 13 Feb 2023

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