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Sequencing techniques

A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq

Lin Wang, Yaqing Si, [ ... ], Thomas P. Brutnell

Arnica montana Stimulates Extracellular Matrix Gene Expression in a Macrophage Cell Line Differentiated to Wound-Healing Phenotype

Marta Marzotto, Clara Bonafini, [ ... ], Paolo Bellavite

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

Wei Shen, Shuai Le, Yan Li, Fuquan Hu

Absence of Ancient DNA in Sub-Fossil Insect Inclusions Preserved in ‘Anthropocene’ Colombian Copal

David Penney, Caroline Wadsworth, [ ... ], Terence A. Brown

Next-Generation Sequencing of RNA and DNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue

Jakob Hedegaard, Kasper Thorsen, [ ... ], Lars Dyrskjøt

High-Resolution Transcriptome of Human Macrophages

Marc Beyer, Michael R. Mallmann, [ ... ], Joachim L. Schultze

A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data

Zong Hong Zhang, Dhanisha J. Jhaveri, [ ... ], Qiong-Yi Zhao

Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data

Yan Guo, Quanhu Sheng, [ ... ], Yu Shyr

Estimates of Genetic Differentiation Measured by F_ST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

Eva-Maria Willing, Christine Dreyer, Cock van Oosterhout

The Susceptibility of Pseudomonas aeruginosa Strains from Cystic Fibrosis Patients to Bacteriophages

Christiane Essoh, Yann Blouin, [ ... ], Christine Pourcel

Systematic Comparison of Three Methods for Fragmentation of Long-Range PCR Products for Next Generation Sequencing

Ellen Knierim, Barbara Lucke, [ ... ], Dominik Seelow

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez, Sébastien Harispe, Frédéric Delsuc, Emmanuel J. P. Douzery

Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes

Marc T. J. Johnson, Eric J. Carpenter, [ ... ], Gane Ka-Shu Wong

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