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Sequencing techniques

Neurocan expression associates with better survival and viral positivity in Merkel cell carcinoma

Marko Salmikangas, Maria Laaksonen, Henrik Edgren, Marco Salgado, Anu Suoranta, Pirkko Mattila, Virve Koljonen, Tom Böhling, Harri Sihto

published 05 May 2023

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Identifying miRNA-mRNA regulatory networks on extreme n-6/n-3 polyunsaturated fatty acid ratio expression profiles in porcine skeletal muscle

Yron Joseph Yabut Manaig, Lourdes Criado-Mesas, Anna Esteve-Codina, Emilio Mármol-Sánchez, Anna Castelló, Armand Sánchez, Josep M. Folch

published 04 May 2023

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Allele mining, amplicon sequencing and computational prediction of Solanum melongena L. FT/TFL1 gene homologs uncovers putative variants associated to seed dormancy and germination

Ranjita Subramaniam, Vijay Subbiah Kumar

published 03 May 2023

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A correlation coefficient-based feature selection approach for virus-host protein-protein interaction prediction

Ahmed Hassan Ibrahim, Onur Can Karabulut, Betül Asiye Karpuzcu, Erdem Türk, Barış Ethem Süzek

published 02 May 2023

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Modeling SARS-CoV-2 nucleotide mutations as a stochastic process

Maverick Lim Kai Rong, Ercan Engin Kuruoglu, Wai Kin Victor Chan

published 28 Apr 2023

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Evaluation of alcohol-free mouthwash for studies of the oral microbiome

Yukiko Yano, Emily Vogtmann, Alaina H. Shreves, Stephanie J. Weinstein, Amanda Black, Norma Diaz-Mayoral, Yunhu Wan, Weiyin Zhou, Xing Hua, Casey L. Dagnall, Amy Hutchinson, Kristine Jones, Belynda D. Hicks, Kathleen Wyatt, Michelle Brotzman, Nicole Gerlanc, Wen-Yi Huang, Paul S. Albert, Nicolas Wentzensen, Christian C. Abnet

published 27 Apr 2023

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Transcriptomic analysis of the honey bee (Apis mellifera) queen brain reveals that gene expression is affected by pesticide exposure during development

Myra Dickey, Elizabeth M. Walsh, Tonya F. Shepherd, Raul F. Medina, Aaron Tarone, Juliana Rangel

published 27 Apr 2023

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Premature senescence of the liver in Alagille patients

Giulia Jannone, Catherine de Magnée, Roberto Tambucci, Jonathan Evraerts, Joachim Ravau, Mustapha Najimi, Etienne Marc Sokal

published 26 Apr 2023

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Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing

Sureshnee Pillay, James Emmanuel San, Derek Tshiabuila, Yeshnee Naidoo, Yusasha Pillay, Akhil Maharaj, Ugochukwu J. Anyaneji, Eduan Wilkinson, Houriiyah Tegally, Richard J. Lessells, Cheryl Baxter, Tulio de Oliveira, Jennifer Giandhari

published 26 Apr 2023

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High concordance rate of capillary electrophoresis workflow for microsatellite instability analysis and mismatch repair (MMR) immunostaining in colorectal carcinoma

Wenya Huang, Chung-Liang Ho, Chung-Ta Lee, Wan-Li Chen, Shu-Ching Yang, Nan-Haw Chow, Yi-Lin Chen

published 25 Apr 2023

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Wastewater surveillance of SARS-CoV-2 genomic populations on a country-wide scale through targeted sequencing

Florencia Cancela, Natalia Ramos, Davida S. Smyth, Claudia Etchebehere, Mabel Berois, Jesica Rodríguez, Caterina Rufo, Alicia Alemán, Liliana Borzacconi, Julieta López, Elizabeth González, Germán Botto, Starla G. Thornhill, Santiago Mirazo, Mónica Trujillo

published 21 Apr 2023

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Phylogenetic trees of closely related bacterial species and subspecies based on frequencies of short nucleotide sequences

Yoshio Nakano, Yusaku Domon, Kenji Yamagishi

published 20 Apr 2023

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GRACE: Graph autoencoder based single-cell clustering through ensemble similarity learning

Jun Seo Ha, Hyundoo Jeong

published 14 Apr 2023

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