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Sequencing techniques

Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection

Nikoletta Katsaouni, Pablo Llavona, Yascha Khodamoradi, Ann-Kathrin Otto, Stephanie Körber, Christof Geisen, Christian Seidl, Maria J. G. T. Vehreschild, Sandra Ciesek, Jörg Ackermann, Ina Koch, Marcel H. Schulz, Daniela S. Krause

published 16 Nov 2023

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A novel f-divergence based generative adversarial imputation method for scRNA-seq data analysis

Tong Si, Zackary Hopkins, John Yanev, Jie Hou, Haijun Gong

published 10 Nov 2023

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Flow cytometry-based quantification of genome editing efficiency in human cell lines using the L1CAM gene

Muhammad Nazmul Hasan, Toshinori Hyodo, Mrityunjoy Biswas, Md. Lutfur Rahman, Yuko Mihara, Sivasundaram Karnan, Akinobu Ota, Shinobu Tsuzuki, Yoshitaka Hosokawa, Hiroyuki Konishi

published 09 Nov 2023

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The microRNA-mediated gene regulatory network in the hippocampus and hypothalamus of the aging mouse

Choijamts Munkhzul, Sun Shin Yi, Junhyung Kim, Seongsoo Lee, Hyuntae Kim, Jong-Seok Moon, Mihye Lee

published 09 Nov 2023

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Human dermal fibroblast subpopulations and epithelial mesenchymal transition signals in hidradenitis suppurativa tunnels are normalized by spleen tyrosine kinase antagonism in vivo

Akshay Flora, Rebecca Jepsen, Emily K. Kozera, Jane A. Woods, Geoffrey D. Cains, Michael Radzieta, Slade O. Jensen, Matthew Malone, John W. Frew

published 03 Nov 2023

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Levodopa-induced dyskinesia in early-onset Parkinson’s disease (EOPD) associates with glucocerebrosidase mutation: A next-generation sequencing study in EOPD patients in Thailand

Sekh Thanprasertsuk, Prasit Phowthongkum, Thitipong Hopetrungraung, Chalalai Poorirerngpoom, Tikumphorn Sathirapatya, Patsorn Wichit, Onanong Phokaewvarangkul, Kornkiat Vongpaisarnsin, Saknan Bongsebandhu-phubhakdi, Roongroj Bhidayasiri

published 31 Oct 2023

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Rapid and collective determination of the complete “hot-spring frog” mitochondrial genome containing long repeat regions using Nanopore sequencing

Yuka Asaeda, Kento Shiraga, Makoto Suzuki, Yoshihiro Sambongi, Hajime Ogino, Takeshi Igawa

published 31 Oct 2023

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RNA-seq RNAaccess identified as the preferred method for gene expression analysis of low quality FFPE samples

Kai Song, Emon Elboudwarej, Xi Zhao, Luting Zhuo, David Pan, Jinfeng Liu, Carrie Brachmann, Scott D. Patterson, Oh Kyu Yoon, Marianna Zavodovskaya

published 26 Oct 2023

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Biochemical and molecular characterization of the SBiP1 chaperone from Symbiodinium microadriaticum CassKB8 and light parameters that modulate its phosphorylation

Raúl Eduardo Castillo-Medina, Tania Islas-Flores, Estefanía Morales-Ruiz, Marco A. Villanueva

published 20 Oct 2023

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An invasive appetite: Combining molecular and stable isotope analyses to reveal the diet of introduced house mice (Mus musculus) on a small, subtropical island

Wieteke A. Holthuijzen, Elizabeth N. Flint, Stefan J. Green, Jonathan H. Plissner, Daniel Simberloff, Dagmar Sweeney, Coral A. Wolf, Holly P. Jones

published 19 Oct 2023

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On the use of QDE-SVM for gene feature selection and cell type classification from scRNA-seq data

Grace Yee Lin Ng, Shing Chiang Tan, Chia Sui Ong

published 19 Oct 2023

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Transcriptomic analyses of juvenile Striped Bass (Morone saxatilis) exposed to chronic and acute temperature change

Faith M. Penny, Scott A. Pavey

published 19 Oct 2023

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Development of a one-step reverse transcription-quantitative polymerase chain reaction assay for the detection of porcine reproductive and respiratory syndrome virus

Hansong Chae, Hyun Soo Roh, Young Mi Jo, Won Gyeong Kim, Jeong Byoung Chae, Seung-Uk Shin, Jung Won Kang

published 16 Oct 2023

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