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Sequencing techniques

A comprehensive framework for advanced protein classification and function prediction using synergistic approaches: Integrating bispectral analysis, machine learning, and deep learning

Hiam Alquran, Amjed Al Fahoum, Ala’a Zyout, Isam Abu Qasmieh

published 14 Dec 2023

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Performance of the cobas EZH2 mutation test on clinical samples from non-Hodgkin lymphoma patients

Johnny Y. Shyu, Peter A. Schlag, Sylwia M. Karwowska, Chitra F. Manohar, Huan M. Truong, John W. Longshore, Guili Zhang

published 14 Dec 2023

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In-silico selection of peptides for the recognition of imidacloprid

Sarah Aldulaijan

published 12 Dec 2023

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Ryegrass mottle virus complete genome determination and development of infectious cDNA by combining two methods– 3′ RACE and RNA-Seq

Ina Balke, Ivars Silamikelis, Ilze Radovica-Spalvina, Vilija Zeltina, Gunta Resevica, Davids Fridmanis, Andris Zeltins

published 05 Dec 2023

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Reduced representation approaches produce similar results to whole genome sequencing for some common phylogeographic analyses

Drew J. Duckett, Kailee Calder, Jack Sullivan, David C. Tank, Bryan C. Carstens

published 30 Nov 2023

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Portable BLAST-like algorithm library and its implementations for command line, Python, and R

Steven Schmid, Aditya Jeevannavar, Timothy R. Julian, Manu Tamminen

published 30 Nov 2023

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Exploring cadmium stress responses in sisal roots: Insights from biochemical and transcriptome analysis

Jing Li, Lifang Ge, Ping Liu, Zhaoxue Huang, Shibei Tan, Weihuai Wu, Tao Chen, Jingen Xi, Xing Huang, Kexian Yi, Helong Chen

published 29 Nov 2023

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Field-based detection of bacteria using nanopore sequencing: Method evaluation for biothreat detection in complex samples

Andrea D. Tyler, Jane McAllister, Helen Stapleton, Penny Gauci, Kym Antonation, David Thirkettle-Watts, Cindi R. Corbett

published 28 Nov 2023

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selSeq: A method for the enrichment of non-polyadenylated RNAs including enhancer and long non-coding RNAs for sequencing

Jason D. Limberis, Alina Nalyvayko, Joel D. Ernst, John Z. Metcalfe

published 28 Nov 2023

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Enteric pharmacokinetics of monomeric and multimeric camelid nanobody single-domain antibodies

Michelle Debatis, Hillary Danz, Jacqueline M. Tremblay, Kimberly Gaspie, Raymond K. Kudej, Vladimir Vigdorovich, Noah Sather, Justyna J. Jaskiewicz, Saul Tzipori, Charles B. Shoemaker

published 27 Nov 2023

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Adaptation of CUT&RUN for use in African trypanosomes

Geneva Miller, Lindsey M. Rollosson, Carrie Saada, Serenity J. Wade, Danae Schulz

published 21 Nov 2023

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Whole blood RNA extraction efficiency contributes to variability in RNA sequencing data sets

William W. Wilfinger, Hamid R. Eghbalnia, Karol Mackey, Robert Miller, Piotr Chomczynski

published 16 Nov 2023

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Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection

Nikoletta Katsaouni, Pablo Llavona, Yascha Khodamoradi, Ann-Kathrin Otto, Stephanie Körber, Christof Geisen, Christian Seidl, Maria J. G. T. Vehreschild, Sandra Ciesek, Jörg Ackermann, Ina Koch, Marcel H. Schulz, Daniela S. Krause

published 16 Nov 2023

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