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Sequencing techniques

Transcriptomic analysis of potato (Solanum tuberosum L.) tuber development reveals new insights into starch biosynthesis

Maryam Shirani-Bidabadi, Farhad Nazarian-Firouzabadi, Karim Sorkheh, Ahmad Ismaili

published 04 Apr 2024

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A quantitative assay for the assessment of cutaneous human papillomaviruses and polyomaviruses over time: A proof-of-concept in two patients with atopic dermatitis and psoriasis

Aurélie Du-Thanh, Vincent Foulongne, Olivier Dereure, Marc Eloit, Philippe Pérot

published 03 Apr 2024

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Comparing modern identification methods for wild bees: Metabarcoding and image-based morphological taxonomic assignment

Cassandra D. Smith, Robert S. Cornman, Jennifer A. Fike, Johanna M. Kraus, Sara J. Oyler-McCance, Carrie E. Givens, Michelle L. Hladik, Mark W. Vandever, Dana W. Kolpin, Kelly L. Smalling

published 02 Apr 2024

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Whole transcriptome sequencing analyses of islets reveal ncRNA regulatory networks underlying impaired insulin secretion and increased β-cell mass in high fat diet-induced diabetes mellitus

Jinfang Ma, Rui Gao, Qingxing Xie, Xiaohui Pan, Nanwei Tong

published 01 Apr 2024

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Zoothamnium mariella sp. nov., a marine, colonial ciliate with an atypcial growth pattern, and its ectosymbiont Candidatus Fusimicrobium zoothamnicola gen. nov., sp. nov.

Vincent Kendlbacher, Teresa Maria Rosa Winter, Monika Bright

published 01 Apr 2024

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Disulfide-constrained peptide scaffolds enable a robust peptide-therapeutic discovery platform

Lijuan Zhou, Fei Cai, Yanjie Li, Xinxin Gao, Yuehua Wei, Anna Fedorova, Daniel Kirchhofer, Rami N. Hannoush, Yingnan Zhang

published 28 Mar 2024

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Changes in the intestinal microbiota of individuals with non-alcoholic fatty liver disease based on sequencing: An updated systematic review and meta-analysis

Wenpin Cai, Ting Qiu, Weitao Hu, Taiyong Fang

published 28 Mar 2024

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A phage-displayed disulfide constrained peptide discovery platform yields novel human plasma protein binders

Xinxin Gao, Harini Kaluarachchi, Yingnan Zhang, Sunhee Hwang, Rami N. Hannoush

published 28 Mar 2024

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Study protocol: Identifying transcriptional regulatory alterations of chronic effects of blast and disturbed sleep in United States Veterans

Molly J. Sullan, Kelly A. Stearns-Yoder, Zhaoyu Wang, Andrew J. Hoisington, Adam D. Bramoweth, Walter Carr, Yongchao Ge, Hanga Galfalvy, Fatemah Haghighi, Lisa A. Brenner

published 27 Mar 2024

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Comparative study on differential expression analysis methods for single-cell RNA sequencing data with small biological replicates: Based on single-cell transcriptional data of PBMCs from COVID-19 severe patients

Jie Xue, Xinfan Zhou, Jing Yang, Adan Niu

published 27 Mar 2024

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GraphMHC: Neoantigen prediction model applying the graph neural network to molecular structure

Hoyeon Jeong, Young-Rae Cho, Jungsoo Gim, Seung-Kuy Cha, Maengsup Kim, Dae Ryong Kang

published 27 Mar 2024

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High-throughput sequencing of insect specimens with sub-optimal DNA preservation using a practical, plate-based Illumina-compatible Tn5 transposase library preparation method

Lauren Cobb, Erik de Muinck, Spyros Kollias, Morten Skage, Gregor D. Gilfillan, Markus A. K. Sydenham, Shuo-Wang Qiao, Bastiaan Star

published 22 Mar 2024

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Transcriptomic changes behind Sparus aurata hepatic response to different aquaculture challenges: An RNA-seq study and multiomics integration

Cláudia Raposo de Magalhães, Kenneth Sandoval, Ferenc Kagan, Grace McCormack, Denise Schrama, Raquel Carrilho, Ana Paula Farinha, Marco Cerqueira, Pedro M. Rodrigues

published 22 Mar 2024

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