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Sequencing techniques

Neural and endothelial cell-derived extracellular vesicles mediate Zika virus genome dissemination and productive infection in vivo

María-Angélica Calderón-Peláez, Myriam L. Velandia-Romero, J. Manuel Matiz-González, Jaime E. Castellanos

published 26 Nov 2025

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Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, Omer Salem Alkhnbashi, Assad Al-Thukair, Ajibola H. Okeyode, Karthikeyan G, Alexis Nzila

published 19 Nov 2025

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ReadSeeker: A DNABERT based de-novo read-level gene predictor

Ben Wulf, Piotr Wojciech Dabrowski

published 13 Nov 2025

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Genetic diversity and population structure of the natural population of Helicoverpa armigera in Northwest China using Genotyping by Sequencing (GBS) technology

Zhongxiong Ning, Jiali He, Jianhao Dong, Weizheng Li, Ruihao Li, Zhengzhen Gao, Dongmei Wang, Haiqiang Li, Bing Liu, Yujiao Wang, Wei Lu

published 06 Nov 2025

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Ionizing radiation leads to exosome secretion in macrophages through MYC-mediated pathways

Hanui Lee, Gyeong Han Jeong, Geun-Joong Kim, Seung Sik Lee, Byung Yeoup Chung, Hyoung-Woo Bai

published 05 Nov 2025

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Evaluating machine learning approaches for host prediction using H3 influenza genomic data

Hoc Tran, Olaf Berke, Nicole Ricker, Zvonimir Poljak

published 05 Nov 2025

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Sequencing and analysis of 131 SARS-CoV-2 isolates in previously sampled and unsampled regions of Jordan from 2020 to 2023

Rame Khasawneh, Andrew W. Bartlow, Shirin Almharat, Abdullah Almuhasen, Ali Alhuniti, Lena Hajaya, Al Anood Al Habashneh, Osama Alshudefat, Mohammad Dojan, Abdelghani Tbakhi, Zeena Shaheen, Eiad Atwa, Colin PS Kruse, Osama Alsmadi, Samuel I. Koehler

published 27 Oct 2025

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Machine learning reveals distinct T-cell receptor clusters in plasma cell dyscrasias compared to healthy controls

David G. Coffey, Yong Zhang, Elizabeth Hill, Frank Cross Jr., Reena Philip, Marc R. Theoret, Ola Landgren, Andrea C. Baines, Dickran Kazandjian

published 27 Oct 2025

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Germinal center trajectories and transcriptional signatures define CLL subtypes and their pathway regulators

Ahmed Mohamed, Luca Giudice, José Basílio, Sabina Barresi, Pradeep Kumar Kopparapu, Vanda Friman, Marco Tartaglia, Tarja Malm, Andreas Tilevik, Ola Grimsholm

published 22 Oct 2025

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Investigating the evolutionary dynamics and mutational pattern of SARS-CoV-2 spike gene on selected SARS-CoV-2 variants

Bachir Balech, Alessandra Lo Presti, Claudia Telegrafo, Lucia Maisto, Emanuela Giombini, Angela Di Martino, Luigina Ambrosio, Apollonia Tullo, Paola Stefanelli, on behalf of the Italian Genomic Laboratory Network

published 21 Oct 2025

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SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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Evaluation of nanopore sequencing for increasing accessibility of eDNA studies in biodiverse countries

Daniel Gygax, Sabina Ramirez, Moses Chibesa, Twakundine Simpamba, Michael Riffel, Tom Riffel, Amrita Srivathsan, Reindert Nijland, Lara Urban

published 16 Oct 2025

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Identification of genes that differentiate Mannheimia haemolytica genotypes 1 and 2 using a pangenome approach

Darien Deschner, Janet E. Hill

published 16 Oct 2025

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