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Sequencing techniques

Increased scalability and sequencing quality of an epigenetic age prediction assay

Benjamin Mayne, David Chandler, Christopher Noune, Thomas Espinoza, David Roberts, Chloe Anderson, Oliver Berry

published 14 May 2024

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Explainable machine learning approach for cancer prediction through binarilization of RNA sequencing data

Tianjie Chen, Md Faisal Kabir

published 10 May 2024

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SARS-CoV-2 variant introduction following spring break travel and transmission mitigation strategies

Justin M. Napolitano, Sujata Srikanth, Rooksana E. Noorai, Stevin Wilson, Kaitlyn E. Williams, Ramses A. Rosales-Garcia, Brian Krueger, Chloe Emerson, Scott Parker, John Pruitt, Rachel Dango, Lax Iyer, Adib Shafi, Iromi Jayawardena, Christopher L. Parkinson, Christopher McMahan, Lior Rennert, Congyue Annie Peng, Delphine Dean

published 09 May 2024

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E-CLEAP: An ensemble learning model for efficient and accurate identification of antimicrobial peptides

Si-Cheng Wang

published 09 May 2024

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Zmiz1 is a novel regulator of lymphatic endothelial cell gene expression and function

Rajan K. C., Nehal R. Patel, Anoushka Shenoy, Joshua P. Scallan, Mark Y. Chiang, Maria J. Galazo, Stryder M. Meadows

published 08 May 2024

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Advancing responsible genomic analyses of ancient mollusc shells

Raphaël Martin-Roy, Jakob Thyrring, Xavier Mata, Pernille Bangsgaard, Ole Bennike, Gunvor Christiansen, Svend Funder, Anne Birgitte Gotfredsen, Kristian Murphy Gregersen, Camilla Haarby Hansen, Peter Carsten Ilsøe, Lutz Klassen, Inge Kjær Kristensen, Gerd Bindesbøl Ravnholt, Frédéric Marin, Clio Der Sarkissian

published 06 May 2024

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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara

published 06 May 2024

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Annotation of nuclear lncRNAs based on chromatin interactions

Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y. Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J. Makeev, Mickaël Mendez, Yasushi Okazaki, Jordan A. Ramilowski, Andrey I. Sigorskikh, Lisa J. Strug, Ken Yagi, Kayoko Yasuzawa, Chi Wai Yip, Chung Chau Hon, Michael M. Hoffman, Chikashi Terao, Ivan V. Kulakovskiy, Takeya Kasukawa, Jay W. Shin, Piero Carninci, Michiel J. L. de Hoon

published 06 May 2024

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Analysis the molecular similarity of least common amino acid sites in ACE2 receptor to predict the potential susceptible species for SARS-CoV-2

YeZhi Hu, Arivizhivendhan Kannan Villalan, Xin Fan, Shuang Zhang, Fekede Regassa Joka, XiaoDong Wu, HaoNing Wang, XiaoLong Wang

published 02 May 2024

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The association of EGFR amplification with aberrant exon 20 insertion report using the cobas EGFR Mutation Test v2

Man-San Zhang, Yi-Chen Yeh, Hsien-Neng Huang, Long-Wei Lin, Yen-Lin Huang, Lei-Chi Wang, Lai-Jin Yao, Tze-Chun Hung, Yu-Fen Tseng, Yi-Hsuan Lee, Wei-Yu Liao, Jin-Yuan Shih, Min-Shu Hsieh

published 30 Apr 2024

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Revealing the microbiome diversity and biocontrol potential of field Aedes ssp.: Implications for disease vector management

Apolinar M. Hernández, Luis D. Alcaraz, Cristóbal Hernández-Álvarez, Miguel F. Romero, Angélica Jara-Servín, Hugo Barajas, Carlos M. . Ramírez, Mariana Peimbert

published 29 Apr 2024

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Polyaminated, acetylated and stop codon readthrough of recombinant Francisella tularensis universal stress protein in Escherichia coli

Benjamin Girardo, Lawrence M. Schopfer, Yinshi Yue, Oksana Lockridge, Marilynn A. Larson

published 29 Apr 2024

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Performance of amplicon and capture based next-generation sequencing approaches for the epidemiological surveillance of Omicron SARS-CoV-2 and other variants of concern

Carlos Daviña-Núñez, Sonia Pérez, Jorge Julio Cabrera-Alvargonzález, Anniris Rincón-Quintero, Ana Treinta-Álvarez, Montse Godoy-Diz, Silvia Suárez-Luque, Benito Regueiro-García

published 29 Apr 2024

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