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Sequencing techniques

Protocol for the establishment of a serine integrase-based platform for functional validation of genetic switch controllers in eukaryotic cells

Marco A. de Oliveira, Lilian H. Florentino, Thais T. Sales, Rayane N. Lima, Luciana R. C. Barros, Cintia G. Limia, Mariana S. M. Almeida, Maria L. Robledo, Leila M. G. Barros, Eduardo O. Melo, Daniela M. Bittencourt, Stevens K. Rehen, Martín H. Bonamino, Elibio Rech

published 23 May 2024

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An NGS-based assay for accurate detection and quantification of immune gene expression in mouse tumor models

Jia Xue, Xiaobo Chen, Xiaoyu An, Jingjing Wang, Mingfa Zang, Binchen Mao, Sheng Guo, Tao Yang, Rajendra Kumari, Qi-Xiang Li

published 20 May 2024

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A culture-independent nucleic acid diagnostics method for use in the detection and quantification of Burkholderia cepacia complex contamination in aqueous finished pharmaceutical products

Huong Duong, Elizabeth Minogue, Shannon Fullbrook, Thomas Barry, Kate Reddington

published 16 May 2024

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RNA sequencing provides novel insights into the pathogenesis of naturally occurring myxomatous mitral valve disease stage B1 in beagle dogs

Tae-Seok Kim, Chae-Yeon Hong, Seong-Ju Oh, Yong-Ho Choe, Tae-Sung Hwang, Jaemin Kim, Sung-Lim Lee, Hakyoung Yoon, Eun-Yeong Bok, A-ra Cho, Yoon Jung Do, Eunju Kim

published 16 May 2024

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Exploring novel immunotherapy biomarker candidates induced by cancer deformation

Se Min Kim, Namu Park, Hye Bin Park, JuKyung Lee, Changho Chun, Kyung Hoon Kim, Jong Seob Choi, Hyung Jin Kim, Sekyu Choi, Jung Hyun Lee

published 14 May 2024

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Increased scalability and sequencing quality of an epigenetic age prediction assay

Benjamin Mayne, David Chandler, Christopher Noune, Thomas Espinoza, David Roberts, Chloe Anderson, Oliver Berry

published 14 May 2024

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Explainable machine learning approach for cancer prediction through binarilization of RNA sequencing data

Tianjie Chen, Md Faisal Kabir

published 10 May 2024

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SARS-CoV-2 variant introduction following spring break travel and transmission mitigation strategies

Justin M. Napolitano, Sujata Srikanth, Rooksana E. Noorai, Stevin Wilson, Kaitlyn E. Williams, Ramses A. Rosales-Garcia, Brian Krueger, Chloe Emerson, Scott Parker, John Pruitt, Rachel Dango, Lax Iyer, Adib Shafi, Iromi Jayawardena, Christopher L. Parkinson, Christopher McMahan, Lior Rennert, Congyue Annie Peng, Delphine Dean

published 09 May 2024

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E-CLEAP: An ensemble learning model for efficient and accurate identification of antimicrobial peptides

Si-Cheng Wang

published 09 May 2024

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Zmiz1 is a novel regulator of lymphatic endothelial cell gene expression and function

Rajan K. C., Nehal R. Patel, Anoushka Shenoy, Joshua P. Scallan, Mark Y. Chiang, Maria J. Galazo, Stryder M. Meadows

published 08 May 2024

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Advancing responsible genomic analyses of ancient mollusc shells

Raphaël Martin-Roy, Jakob Thyrring, Xavier Mata, Pernille Bangsgaard, Ole Bennike, Gunvor Christiansen, Svend Funder, Anne Birgitte Gotfredsen, Kristian Murphy Gregersen, Camilla Haarby Hansen, Peter Carsten Ilsøe, Lutz Klassen, Inge Kjær Kristensen, Gerd Bindesbøl Ravnholt, Frédéric Marin, Clio Der Sarkissian

published 06 May 2024

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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara

published 06 May 2024

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Annotation of nuclear lncRNAs based on chromatin interactions

Saumya Agrawal, Andrey Buyan, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Howard Y. Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J. Makeev, Mickaël Mendez, Yasushi Okazaki, Jordan A. Ramilowski, Andrey I. Sigorskikh, Lisa J. Strug, Ken Yagi, Kayoko Yasuzawa, Chi Wai Yip, Chung Chau Hon, Michael M. Hoffman, Chikashi Terao, Ivan V. Kulakovskiy, Takeya Kasukawa, Jay W. Shin, Piero Carninci, Michiel J. L. de Hoon

published 06 May 2024

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