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Sequencing techniques

Tetracycline and chloramphenicol exposure induce decreased susceptibility to tigecycline and genetic alterations in AcrAB-TolC efflux pump regulators in Escherichia coli and Klebsiella pneumoniae

Nian Anwar Nasralddin, Mehri Haeili, Sasan Karimzadeh, Fatemeh Alsahlani

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

Vasanthi Avadhanula, Chad J. Creighton, [ ... ], Pedro A. Piedra

Deciphering mixed infections by plant RNA virus and reconstructing complete genomes simultaneously present within-host

Martine Bangratz, Aurore Comte, [ ... ], Charlotte Tollenaere

Detection of SARS-CoV-2 and a possible variant in shelter cats

Ogi Okwumabua, Nancy Bradley-Siemens, [ ... ], Melissa Thompson

Next-generation sequencing protocol of hematopoietic stem cells (HSCs). Step-by-step overview and troubleshooting guide

Justyna Jarczak, Kamila Bujko, [ ... ], Magdalena Kucia

tomoseqr: A Bioconductor package for spatial reconstruction and visualization of 3D gene expression patterns based on RNA tomography

Ryosuke Matsuzawa, Daichi Kawahara, [ ... ], Haruka Ozaki

Clonal phylogenies inferred from bulk, single cell, and spatial transcriptomic analysis of epithelial cancers

Andrew Erickson, Sandy Figiel, [ ... ], Alastair D. Lamb

Whole genome sequences of nine Taylorella equigenitalis strains isolated in the Czech Republic between 1982–2021: Molecular dating suggests a common ancestor at the time of Roman Empire

Matěj Hrala, Petr Andrla, [ ... ], David Šmajs

Site-specific prediction of O-GlcNAc modification in proteins using evolutionary scale model

Ayesha Khalid, Afshan Kaleem, [ ... ], Shagufta Naz

Loss of Mfn1 but not Mfn2 enhances adipogenesis

Jake P. Mann, Luis Carlos Tábara, [ ... ], David B. Savage

Comparing subsampling strategies for metagenomic analysis in microbial studies using amplicon sequence variants versus operational taxonomic units

Daniel Segura, Divya Sharma, Osvaldo Espin-Garcia

Plasmodium falciparum surf_4.1 in clinical isolates: From genetic variation and variant diversity to in silico design immunopeptides for vaccine development

Nitchakarn Noranate, Jariya Sripanomphong, Fingani Annie Mphande- Nyasulu, Suwanna Chaorattanakawee

Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis

Ali Bigdeli, Mostafa Ghaderi-Zefrehei, [ ... ], S. Shahriar Arab

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