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Sequencing techniques

Classification of virulence factors based on dual-channel neural networks with pre-trained language models

Guanghui Li, Peiyang Song, Jiawei Luo, Cheng Liang

Evaluation of RNA extraction and rRNA depletion protocols for RNA-Seq in eleven edible seaweed species from brown, red, and green algae

Rob J. Dekker, Wim A. Ensink, [ ... ], Timo M. Breit

Next-Gen intestinal parasite detection: Leveraging metataxonomics for improved diagnosis of intestinal protists and helminths

Katherine Bedoya-Urrego, Nicolas Rozo-Montoya, [ ... ], Juan F. Alzate

A methodology for calculating the rarity of diverse proteins based on functional specificity and thermodynamic stability

Brian J. Miller

Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples

Kranti Konganti, Julie A. Kase, Narjol Gonzalez-Escalona

Single-cell RNA-seq data normalization: A benchmarking study

Qinyu Ge, Yuqi Sheng, [ ... ], Min Pan

SF3B1^K700E mutation in human embryonic stem cells causes aberrant expression of immune-related genes

Mahtab Dastpak, Claudia A. Mimoso, [ ... ], Robin Reed

Development of a competition assay to assess the in vitro fitness of dengue virus serotypes using an optimized serotype-specific qRT-PCR

Anne-Fleur Griffon, Loeïza Rault, [ ... ], Catherine Inizan

UTX/Top2β axis mediated spinal cord microvascular endothelial cells senescence exacerbates spinal cord injury

Dongliang Liu, Yudong Liu, Tianding Wu, Jianzhong Hu

Therapeutic mechanism of Pithecellobium clypearia Benth. on imiquimod-induced psoriasis revealed by tissue transcriptomics in mice

Xiyuan He, Yueting Mo, [ ... ], Ting Zhang

Comparing RNA extraction protocols from formalin-fixed paraffin-embedded microcore samples

Maxime Golias, Zuzana Krupova, [ ... ], Dominique Heymann

Targeted fetal NGS panel reveals genetic conditions in sonographically normal fetuses: Insights from a large cohort study

Han-Ying Chen, Yi-Ting Wang, [ ... ], Tsang-Ming Ko

Infiltration of CXCL9+ macrophages confers a favorable prognosis in breast cancer: Insights from an integrated single-cell RNA and bulk RNA sequencing study

Bin Liang, Zhicai Duan, Siyu Long, Peng Zhou

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