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Sequencing techniques

Comparative transcriptome analysis provides insights into molecular mechanisms for parthenocarpic fruit development in eggplant (Solanum melongena L.)

Xia Chen, Min Zhang, Jie Tan, Shuping Huang, Chunli Wang, Hongyuan Zhang, Taiming Tan

published 12 Jun 2017

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Phylogenetic analysis of Mycobacterium massiliense strains having recombinant rpoB gene laterally transferred from Mycobacterium abscessus

Byoung-Jun Kim, Ga-Na Kim, Bo-Ram Kim, Tae-Sun Shim, Yoon-Hoh Kook, Bum-Joon Kim

published 12 Jun 2017

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Optimized double-digest genotyping by sequencing (ddGBS) method with high-density SNP markers and high genotyping accuracy for chickens

Yuzhe Wang, Xuemin Cao, Yiqiang Zhao, Jing Fei, Xiaoxiang Hu, Ning Li

published 09 Jun 2017

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Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii

Paul G. Higgins, Karola Prior, Dag Harmsen, Harald Seifert

published 08 Jun 2017

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De novo transcriptome assembly and quantification reveal differentially expressed genes between soft-seed and hard-seed pomegranate (Punica granatum L.)

Hui Xue, Shangyin Cao, Haoxian Li, Jie Zhang, Juan Niu, Lina Chen, Fuhong Zhang, Diguang Zhao

published 08 Jun 2017

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Frequency of respiratory virus infections and next-generation analysis of influenza A/H1N1pdm09 dynamics in the lower respiratory tract of patients admitted to the ICU

Antonio Piralla, Francesca Rovida, Alessia Girello, Marta Premoli, Francesco Mojoli, Mirko Belliato, Antonio Braschi, Giorgio Iotti, Elena Pariani, Laura Bubba, Alessandro R. Zanetti, Fausto Baldanti

published 07 Jun 2017

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Comparative transcriptomics of genetically divergent lines of chickens in response to Marek’s disease virus challenge at cytolytic phase

Kunzhe Dong, Shuang Chang, Qingmei Xie, Alexis Black-Pyrkosz, Huanmin Zhang

published 07 Jun 2017

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A prospective pilot study of genome-wide exome and transcriptome profiling in patients with small cell lung cancer progressing after first-line therapy

Glen J. Weiss, Sara A. Byron, Jessica Aldrich, Ashish Sangal, Heather Barilla, Jeffrey A. Kiefer, John D. Carpten, David W. Craig, Timothy G. Whitsett

published 06 Jun 2017

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Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing

Alexandra Stoll, Dörte Harpke, Claudia Schütte, Nadine Stefanczyk, Ronny Brandt, Frank R. Blattner, Dietmar Quandt

published 02 Jun 2017

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Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis

Simon Haile, Pawan Pandoh, Helen McDonald, Richard D. Corbett, Philip Tsao, Heather Kirk, Tina MacLeod, Martin Jones, Steve Bilobram, Denise Brooks, Duane Smailus, Christian Steidl, David W. Scott, Miruna Bala, Martin Hirst, Diane Miller, Richard A. Moore, Andrew J. Mungall, Robin J. Coope, Yussanne Ma, Yongjun Zhao, Rob A. Holt, Steven J. Jones, Marco A. Marra

published 01 Jun 2017

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Alport syndrome cold cases: Missing mutations identified by exome sequencing and functional analysis

Chiara Chiereghin, Michela Robusto, Antonio Mastrangelo, Pierangela Castorina, Giovanni Montini, Marisa Giani, Stefano Duga, Rosanna Asselta, Giulia Soldà

published 01 Jun 2017

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Decreased emergence of HIV-1 drug resistance mutations in a cohort of Ugandan women initiating option B+ for PMTCT

Patrycja Machnowska, Andrea Hauser, Karolin Meixenberger, Britta Altmann, Norbert Bannert, Eva Rempis, Alexandra Schnack, Sarah Decker, Vera Braun, Priscilla Busingye, John Rubaihayo, Gundel Harms, Stefanie Theuring

published 31 May 2017

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Alfalfa virus S, a new species in the family Alphaflexiviridae

Lev G. Nemchinov, Samuel C. Grinstead, Dimitre S. Mollov

published 30 May 2017

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