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Sequencing techniques

Assessing intragenomic variation of the internal transcribed spacer two: Adapting the Illumina metagenomics protocol

Lo’ai Alanagreh, Caitlin Pegg, Amritha Harikumar, Mark Buchheim

published 18 Jul 2017

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Transcriptome analysis of the sea cucumber (Apostichopus japonicus) with variation in individual growth

Lei Gao, Chongbo He, Xiangbo Bao, Meilin Tian, Zhen Ma

published 17 Jul 2017

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Independent Component Analysis (ICA) based-clustering of temporal RNA-seq data

Moysés Nascimento, Fabyano Fonseca e Silva, Thelma Sáfadi, Ana Carolina Campana Nascimento, Talles Eduardo Maciel Ferreira, Laís Mayara Azevedo Barroso, Camila Ferreira Azevedo, Simone Eliza Faccione Guimarães, Nick Vergara Lopes Serão

published 17 Jul 2017

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Transcriptional profiling of the rat nucleus accumbens after modest or high alcohol exposure

Julia Morud, Arghavan Ashouri, Erik Larsson, Mia Ericson, Bo Söderpalm

published 17 Jul 2017

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Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield

Shukun Jiang, Shichen Sun, Liangming Bai, Guohua Ding, Tongtong Wang, Tianshu Xia, Hui Jiang, Xijuan Zhang, Fengming Zhang

published 17 Jul 2017

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A sequence level model of an intact locus predicts the location and function of nonadditive enhancers

Kenneth A. Barr, John Reinitz

published 17 Jul 2017

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Comparative transcriptome analysis of flower heterosis in two soybean F1 hybrids by RNA-seq

Chunbao Zhang, Chunjing Lin, Fuyou Fu, Xiaofang Zhong, Bao Peng, Hao Yan, Jingyong Zhang, Weilong Zhang, Pengnian Wang, Xiaoyang Ding, Wei Zhang, Limei Zhao

published 14 Jul 2017

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Evaluating whole genome sequence data from the Genetic Absence Epilepsy Rat from Strasbourg and its related non-epileptic strain

Pablo M. Casillas-Espinosa, Kim L. Powell, Mingfu Zhu, C. Ryan Campbell, Jessica M. Maia, Zhong Ren, Nigel C. Jones, Terence J. O’Brien, Slavé Petrovski

published 14 Jul 2017

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Tumor Necrosis Factor dynamically regulates the mRNA stabilome in rheumatoid arthritis fibroblast-like synoviocytes

Konstantinos Loupasakis, David Kuo, Upneet K. Sokhi, Christopher Sohn, Bethany Syracuse, Eugenia G. Giannopoulou, Sung Ho Park, Hyelim Kang, Gunnar Rätsch, Lionel B. Ivashkiv, George D. Kalliolias

published 14 Jul 2017

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Increased genetic diversity and prevalence of co-infection with Trypanosoma spp. in koalas (Phascolarctos cinereus) and their ticks identified using next-generation sequencing (NGS)

Amanda D. Barbosa, Alexander W. Gofton, Andrea Paparini, Annachiara Codello, Telleasha Greay, Amber Gillett, Kristin Warren, Peter Irwin, Una Ryan

published 13 Jul 2017

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A complex association between DNA methylation and gene expression in human placenta at first and third trimesters

Yen Ching Lim, Jie Li, Yiyun Ni, Qi Liang, Junjiao Zhang, George S. H. Yeo, Jianxin Lyu, Shengnan Jin, Chunming Ding

published 13 Jul 2017

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Differential chromatin profiles partially determine transcription factor binding

Rujian Chen, David K. Gifford

published 13 Jul 2017

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Genetic variation analysis and relationships among environmental strains of Scedosporium apiospermum sensu stricto in Bangkok, Thailand

Thanwa Wongsuk, Potjaman Pumeesat, Natthanej Luplertlop

published 12 Jul 2017

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