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Sequencing techniques

RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum—A. cepa monosomic addition lines

Mostafa Abdelrahman, Magdi El-Sayed, Shusei Sato, Hideki Hirakawa, Shin-ichi Ito, Keisuke Tanaka, Yoko Mine, Nobuo Sugiyama, Minoru Suzuki, Naoki Yamauchi, Masayoshi Shigyo

published 11 Aug 2017

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Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa

Babu Ramanathan, Hassan Mahmood Jindal, Cheng Foh Le, Ranganath Gudimella, Arif Anwar, Rozaimi Razali, Johan Poole-Johnson, Rishya Manikam, Shamala Devi Sekaran

published 10 Aug 2017

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Prediction of N-linked glycosylation sites using position relative features and statistical moments

Muhammad Aizaz Akmal, Nouman Rasool, Yaser Daanial Khan

published 10 Aug 2017

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Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data

Bo-Young Kim, Jung Hoon Park, Hye-Yeong Jo, Soo Kyung Koo, Mi-Hyun Park

published 09 Aug 2017

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Comparison of alternative approaches for analysing multi-level RNA-seq data

Irina Mohorianu, Amanda Bretman, Damian T. Smith, Emily K. Fowler, Tamas Dalmay, Tracey Chapman

published 08 Aug 2017

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Multi-scale encoding of amino acid sequences for predicting protein interactions using gradient boosting decision tree

Chang Zhou, Hua Yu, Yijie Ding, Fei Guo, Xiu-Jun Gong

published 08 Aug 2017

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CAM: A quality control pipeline for MNase-seq data

Sheng’en Hu, Xiaolan Chen, Ji Liao, Yiqing Chen, Chengchen Zhao, Yong Zhang

published 07 Aug 2017

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Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14

Man-Li Tong, Qiang Zhao, Li-Li Liu, Xiao-Zhen Zhu, Kun Gao, Hui-Lin Zhang, Li-Rong Lin, Jian-Jun Niu, Zhi-Liang Ji, Tian-Ci Yang

published 07 Aug 2017

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Cutaneous transcriptome analysis in NIH hairless mice

Zhong-Hao Ji, Jian Chen, Wei Gao, Jin-Yu Zhang, Fu-Shi Quan, Jin-Ping Hu, Bao Yuan, Wen-Zhi Ren

published 07 Aug 2017

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Understanding the molecular mechanisms underlying the effects of light intensity on flavonoid production by RNA-seq analysis in Epimedium pseudowushanense B.L.Guo

Junqian Pan, Haimei Chen, Baolin Guo, Chang Liu

published 07 Aug 2017

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Classification of the Pospiviroidae based on their structural hallmarks

Tamara Giguère, Jean-Pierre Perreault

published 04 Aug 2017

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The integrated analysis of RNA-seq and microRNA-seq depicts miRNA-mRNA networks involved in Japanese flounder (Paralichthys olivaceus) albinism

Na Wang, Ruoqing Wang, Renkai Wang, Yongsheng Tian, Changwei Shao, Xiaodong Jia, Songlin Chen

published 04 Aug 2017

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Characterization of the genome of a phylogenetically distinct tospovirus and its interactions with the local lesion-induced host Chenopodium quinoa by whole-transcriptome analyses

Wan-Chen Chou, Shih-Shun Lin, Shyi-Dong Yeh, Siang-Ling Li, Ying-Che Peng, Ya-Hsu Fan, Tsung-Chi Chen

published 03 Aug 2017

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