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Sequencing techniques

Can quartet analyses combining maximum likelihood estimation and Hennigian logic overcome long branch attraction in phylogenomic sequence data?

Patrick Kück, Mark Wilkinson, [ ... ], Johann W. Wägele

Investigation of potential targets of Porphyromonas CRISPRs among the genomes of Porphyromonas species

Takayasu Watanabe, Masaki Shibasaki, [ ... ], Ichiro Nakagawa

Sequence-structure relationships, expression profiles, and disease-associated mutations in the paralogs of phosphoglucomutase 1

Andrew G. Muenks, Kyle M. Stiers, Lesa J. Beamer

Cardiac transcriptome profiling of diabetic Akita mice using microarray and next generation sequencing

Varun Kesherwani, Hamid R. Shahshahan, Paras K. Mishra

The effect of Bacopa monnieri on gene expression levels in SH-SY5Y human neuroblastoma cells

How-Wing Leung, Gabriel Foo, [ ... ], Antonius M. J. VanDongen

A comprehensive simulation study on classification of RNA-Seq data

Gökmen Zararsız, Dincer Goksuluk, [ ... ], Ahmet Ozturk

Evaluation of changes to the Rickettsia rickettsii transcriptome during mammalian infection

Sean P. Riley, Ludovic Pruneau, Juan J. Martinez

The remnant of the European rabbit (Oryctolagus cuniculus) IgD gene

Dennis K. Lanning, Pedro J. Esteves, Katherine L. Knight

Differences of lung microbiome in patients with clinically stable and exacerbated bronchiectasis

Min Kwang Byun, Joon Chang, Hyung Jung Kim, Seok Hoon Jeong

Identification of protoplast-isolation responsive microRNAs in Citrus reticulata Blanco by high-throughput sequencing

Xiaoyong Xu, Xiaoling Xu, [ ... ], Weiwen Kong

ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequences

Fwu-Shan Shieh, Patrick Jongeneel, [ ... ], Ying-Hsiu Su

Characterization of a variant of gap junction protein α8 identified in a family with hereditary cataract

Debbie S. Kuo, Jared T. Sokol, [ ... ], Douglas B. Gould

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Eli L. Moss, Shannon B. Falconer, [ ... ], Ami S. Bhatt

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