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Sequencing techniques

Lower pre-ART intra-participant HIV-1 pol diversity may not be associated with virologic failure in adults

Mary F. Kearney, Jonathan Spindler, Ann Wiegand, Wei Shao, Richard Haubrich, Sharon Riddler, Christina M. Lalama, Michael D. Hughes, John M. Coffin, John W. Mellors

published 25 Jan 2018

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ViroFind: A novel target-enrichment deep-sequencing platform reveals a complex JC virus population in the brain of PML patients

Spyros Chalkias, Joshua M. Gorham, Erica Mazaika, Michael Parfenov, Xin Dang, Steve DePalma, David McKean, Christine E. Seidman, Jonathan G. Seidman, Igor J. Koralnik

published 23 Jan 2018

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KANSL1 variation is not a major contributing factor in self-limited focal epilepsy syndromes of childhood

Kenneth A. Myers, Amelia McGlade, Bernd A. Neubauer, Dennis Lal, Samuel F. Berkovic, Ingrid E. Scheffer, Michael S. Hildebrand

published 19 Jan 2018

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Hybrid genome assembly and annotation of Paenibacillus pasadenensis strain R16 reveals insights on endophytic life style and antifungal activity

Alessandro Passera, Luca Marcolungo, Paola Casati, Milena Brasca, Fabio Quaglino, Chiara Cantaloni, Massimo Delledonne

published 19 Jan 2018

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Circulating neutrophil transcriptome may reveal intracranial aneurysm signature

Vincent M. Tutino, Kerry E. Poppenberg, Kaiyu Jiang, James N. Jarvis, Yijun Sun, Ashish Sonig, Adnan H. Siddiqui, Kenneth V. Snyder, Elad I. Levy, John Kolega, Hui Meng

published 17 Jan 2018

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Three unrelated and unexpected amino acids determine the susceptibility of the interface cysteine to a sulfhydryl reagent in the triosephosphate isomerases of two trypanosomes

Selma Díaz-Mazariegos, Nallely Cabrera, Ruy Perez-Montfort

published 17 Jan 2018

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Phylogenetic diversity, antimicrobial susceptibility and virulence gene profiles of Brachyspira hyodysenteriae isolates from pigs in Germany

Jessica Joerling, Stefanie A. Barth, Karen Schlez, Hermann Willems, Werner Herbst, Christa Ewers

published 11 Jan 2018

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Myocardium of patients with dilated cardiomyopathy presents altered expression of genes involved in thyroid hormone biosynthesis

Carolina Gil-Cayuela, Ana Ortega, Estefanía Tarazón, Luis Martínez-Dolz, Juan Cinca, José Ramón González-Juanatey, Francisca Lago, Esther Roselló-Lletí, Miguel Rivera, Manuel Portolés

published 10 Jan 2018

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Characterization of the naive murine antibody repertoire using unamplified high-throughput sequencing

Trisha A. Rettig, Claire Ward, Bailey A. Bye, Michael J. Pecaut, Stephen K. Chapes

published 10 Jan 2018

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Genome-wide profiling of the PIWI-interacting RNA-mRNA regulatory networks in epithelial ovarian cancers

Garima Singh, Jyoti Roy, Pratiti Rout, Bibekanand Mallick

published 10 Jan 2018

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Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing

Ann-Marie Patch, Katia Nones, Stephen H. Kazakoff, Felicity Newell, Scott Wood, Conrad Leonard, Oliver Holmes, Qinying Xu, Venkateswar Addala, Jenette Creaney, Bruce W. Robinson, Shujin Fu, Chunyu Geng, Tong Li, Wenwei Zhang, Xinming Liang, Junhua Rao, Jiahao Wang, Mingyu Tian, Yonggang Zhao, Fei Teng, Honglan Gou, Bicheng Yang, Hui Jiang, Feng Mu, John V. Pearson, Nicola Waddell

published 10 Jan 2018

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Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew

Wei-Li Guo, Bi-Hua Chen, Xue-Jin Chen, Yan-Yan Guo, He-Lian Yang, Xin-Zheng Li, Guang-Yin Wang

published 10 Jan 2018

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Dysregulation of valvular interstitial cell let-7c, miR-17, miR-20a, and miR-30d in naturally occurring canine myxomatous mitral valve disease

Vicky K. Yang, Albert K. Tai, Terry P. Huh, Dawn M. Meola, Christine M. Juhr, Nicholas A. Robinson, Andrew M. Hoffman

published 09 Jan 2018

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