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Sequencing techniques

Identification of BOLD engine deficiencies and suggestions for improvement based on a curated Tachina (Diptera) record set

Frederik Stein, Oliver Gailing

published 29 Aug 2025

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Modular and cloud-based bioinformatics pipelines for high-confidence biomarker detection in cancer immunotherapy clinical trials

Cu Nguyen, Trinh Nguyen, Gloria Trivitt, Brian Capaldo, Chunhua Yan, Qingrong Chen, Nicholas Renzette, Umit Topaloglu, Daoud Meerzaman

published 26 Aug 2025

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Whole-Genome sequencing of Chikungunya Virus (CHIKV) from Pakistan: Detection of the East/Central/South African (ECSA) genotype during the 2024 outbreak in Mansehra

Massab Umair, Muhammad Yasir, Zunera Jamal, Rabia Hakim, Syed Yawar Saeed, Muhammad Salman, Azhar Iqbal, Muhammad Qasim Khan, Faisal Khanzada, Yusra Javed

published 26 Aug 2025

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Diagnostic accuracy of circulating tumor DNA for detection of ALK rearrangement in lung cancer: A systematic review and meta-analysis of 14 studies

Jiantong Sun, Lan Yang, Dan Liu, Hui Xue, Panwen Tian, Lei Li

published 25 Aug 2025

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Transcriptome sequencing reveals the evolutionary histories and gene expression evolution in two related Pagurus species

Zakea Sultana, Isaac Adeyemi Babarinde, Masafumi Nozawa, Kazuho Ikeo, Akira Asakura, Tomoyuki Nakano

published 20 Aug 2025

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Future Sequon Finder - A novel approach for predicting future N-linked glycosylation sequon locations on viral surface proteins

Shane P. Bryan, Martin S. Zand

published 14 Aug 2025

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Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, Ginger Geiger, Daniel R. Perez, Daniela S. Rajao

published 13 Aug 2025

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Characterization of an unusual carlavirus-like RNA from papaya (Carica papaya) lacking essential genes

Milenka Vera, Raúl Cifuentes, Ronan Keener, Neil Olszewski, Robert A. Alvarez-Quinto, Diego F. Quito-Avila

published 08 Aug 2025

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Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

Frixos Papadopoulos, Tilman Sanchez-Elsner, Mahesan Niranjan, Ashley I. Heinson

published 06 Aug 2025

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A comparison of DNA methylation detection between HiFi sequencing and whole genome bisulfite sequencing in monozygotic twins with Down syndrome

Kanyanee Promsawan, Chalurmpon Srichomthong, Monnat Pongpanich, Vorasuk Shotelersuk

published 05 Aug 2025

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Stable preservation and recovery of methylation marks from FTA elute cards in species with nucleated red blood cells using a customized DNA extraction method

Livia Gerber, Sarah L. Whiteley, Erin E. Hahn, Clare E. Holleley

published 31 Jul 2025

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cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads

Alexander J. Petri, Mai Thi-Huyen Nguyen, Anjali Rajwar, Erik Benson, Kristoffer Sahlin

published 24 Jul 2025

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Identification of podocyte molecular markers in diabetic kidney disease via single-cell RNA sequencing and machine learning

Hailin Li, Quhuan Li, Zuyan Fan, Yue Shen, Jiao Li, Fengxia Zhang

published 21 Jul 2025

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