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Sequencing techniques

LFastqC: A lossless non-reference-based FASTQ compressor

Sultan Al Yami, Chun-Hsi Huang

published 14 Nov 2019

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Fanconi-BRCA pathway mutations in childhood T-cell acute lymphoblastic leukemia

Gayle P. Pouliot, James Degar, Laura Hinze, Bose Kochupurakkal, Chau D. Vo, Melissa A. Burns, Lisa Moreau, Chirag Ganesa, Justine Roderick, Sofie Peirs, Bjorn Menten, Mignon L. Loh, Stephen P. Hunger, Lewis B. Silverman, Marian H. Harris, Kristen E. Stevenson, David M. Weinstock, Andrew P. Weng, Pieter Van Vlierberghe, Alan D. D’Andrea, Alejandro Gutierrez

published 13 Nov 2019

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Discovery of powdery mildew resistance gene candidates from Aegilops biuncialis chromosome 2M^b based on transcriptome sequencing

Huanhuan Li, Zhenjie Dong, Chao Ma, Xiubin Tian, Zhiguo Xiang, Qing Xia, Pengtao Ma, Wenxuan Liu

published 11 Nov 2019

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Unique transcriptomic landscapes identified in idiopathic spontaneous and infection related preterm births compared to normal term births

Heather M. Brockway, Suhas G. Kallapur, Irina A. Buhimschi, Catalin S. Buhimschi, William E. Ackerman, Louis J. Muglia, Helen N. Jones

published 08 Nov 2019

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Metformin strongly affects transcriptome of peripheral blood cells in healthy individuals

Monta Briviba, Ivars Silamikelis, Ineta Kalnina, Laura Ansone, Vita Rovite, Ilze Elbere, Ilze Radovica-Spalvina, Davids Fridmanis, Jekaterina Aladyeva, Ilze Konrade, Valdis Pirags, Janis Klovins

published 08 Nov 2019

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Heteroplasmy in the complete chicken mitochondrial genome

Yanqun Huang, Weiwei Lu, Jiefei Ji, Xiangli Zhang, Pengfei Zhang, Wen Chen

published 08 Nov 2019

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Selective culture enrichment and sequencing of feces to enhance detection of antimicrobial resistance genes in third-generation cephalosporin resistant Enterobacteriaceae

Leon Peto, Nicola J. Fawcett, Derrick W. Crook, Tim E. A. Peto, Martin J. Llewelyn, A. Sarah Walker

published 08 Nov 2019

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Molecular characteristics of segment 5, a unique fragment encoding two partially overlapping ORFs in the genome of rice black-streaked dwarf virus

Hongyue Zu, Hong Zhang, Minhao Yao, Jiayue Zhang, Hong Di, Lin Zhang, Ling Dong, Zhenhua Wang, Yu Zhou

published 07 Nov 2019

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Combined transcriptomics and proteomics forecast analysis for potential genes regulating the Columbian plumage color in chickens

Xinlei Wang, Donghua Li, Sufang Song, Yanhua Zhang, Yuanfang Li, Xiangnan Wang, Danli Liu, Chenxi Zhang, Yanfang Cao, Yawei Fu, Ruili Han, Wenting Li, Xiaojun Liu, Guirong Sun, Guoxi Li, Yadong Tian, Zhuanjian Li, Xiangtao Kang

published 06 Nov 2019

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Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA

Simon Haile, Richard D. Corbett, Steve Bilobram, Karen Mungall, Bruno M. Grande, Heather Kirk, Pawan Pandoh, Tina MacLeod, Helen McDonald, Miruna Bala, Robin J. Coope, Richard A. Moore, Andrew J. Mungall, Yongjun Zhao, Ryan D. Morin, Steven J. Jones, Marco A. Marra

published 31 Oct 2019

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Analytic performance of PANArray HPV and HPV 9G DNA chip tests for genotyping of high-risk human papillomavirus in cervical ThinPrep PreservCyt samples

Jiyoung Kim, Sun-Young Jun

published 31 Oct 2019

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Detection and genetic characterization of Echinococcus granulosus mitochondrial DNA in serum and formalin-fixed paraffin embedded cyst tissue samples of cystic echinococcosis patients

Maryam Moradi, Ahmad Reza Meamar, Lame Akhlaghi, Mona Roozbehani, Elham Razmjou

published 29 Oct 2019

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Transcriptional foliar profile of the C₃-CAM bromeliad Guzmania monostachia

Helenice Mercier, Maria Aurineide Rodrigues, Sónia Cristina da Silva Andrade, Luiz Lehmann Coutinho, Bruno Nobuya Katayama Gobara, Alejandra Matiz, Paulo Tamaso Mioto, Ana Zangirolame Gonçalves

published 29 Oct 2019

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