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Sequence analysis

Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes

Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, David S. Roos

Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of Teleosts

Roderick Nigel Finn, Børge A. Kristoffersen

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, [ ... ], Peer Bork

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

Fernando Dini Andreote, Diego Javier Jiménez, [ ... ], Itamar Soares de Melo

Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses

Janet A. Higgins, Paul C. Bailey, David A. Laurie

Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis

Emmanuel Dias-Neto, Diana N. Nunes, [ ... ], Wadih Arap

VirusFinder: Software for Efficient and Accurate Detection of Viruses and Their Integration Sites in Host Genomes through Next Generation Sequencing Data

Qingguo Wang, Peilin Jia, Zhongming Zhao

A Comparison of Methods for Clustering 16S rRNA Sequences into OTUs

Wei Chen, Clarence K. Zhang, [ ... ], Hongyu Zhao

Utility of the trnH–psbA Intergenic Spacer Region and Its Combinations as Plant DNA Barcodes: A Meta-Analysis

Xiaohui Pang, Chang Liu, [ ... ], Shilin Chen

Reconstructing Mammalian Phylogenies: A Detailed Comparison of the Cytochrome b and Cytochrome Oxidase Subunit I Mitochondrial Genes

Shanan S. Tobe, Andrew C. Kitchener, Adrian M. T. Linacre

Novel Bacterial Taxa in the Human Microbiome

Kristine M. Wylie, Rebecca M. Truty, [ ... ], Katherine S. Pollard

Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing

Sarah M. Hykin, Ke Bi, Jimmy A. McGuire

TreeCluster: Clustering biological sequences using phylogenetic trees

Metin Balaban, Niema Moshiri, [ ... ], Siavash Mirarab

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