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Sequence analysis

DIpartite: A tool for detecting bipartite motifs by considering base interdependencies

Mohammad Vahed, Jun-ichi Ishihara, Hiroki Takahashi

published 30 Aug 2019

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Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis

Eunju Kwon, Shankar Raj Devkota, Deepak Pathak, Pawan Dahal, Dong Young Kim

published 28 Aug 2019

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Borrelia reloaded" (PLoS ONE 13(12): e0208432)" class="list-title">Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432)

Radhey S. Gupta

published 27 Aug 2019

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The number of domains in the ribosomal protein S1 as a hallmark of the phylogenetic grouping of bacteria

Andrey V. Machulin, Evgenia I. Deryusheva, Olga M. Selivanova, Oxana V. Galzitskaya

published 22 Aug 2019

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HPC: Hierarchical phylogeny construction

Anindya Das, Xiaoqiu Huang

published 22 Aug 2019

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TreeCluster: Clustering biological sequences using phylogenetic trees

Metin Balaban, Niema Moshiri, Uyen Mai, Xingfan Jia, Siavash Mirarab

published 22 Aug 2019

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Genome-wide analysis of sulfotransferase genes and their responses to abiotic stresses in Chinese cabbage (Brassica rapa L.)

Lu Jin, Ning Ouyang, Yong Huang, Chunlin Liu, Ying Ruan

published 19 Aug 2019

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Faecalibacterium diversity in dairy cow milk

Keith W. Savin, Jody Zawadzki, Martin J. Auldist, Jianghui Wang, Doris Ram, Simone Rochfort, Benjamin G. Cocks

published 16 Aug 2019

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rawMSA: End-to-end Deep Learning using raw Multiple Sequence Alignments

Claudio Mirabello, Björn Wallner

published 15 Aug 2019

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Viral taxonomy derived from evolutionary genome relationships

Tyler J. Dougan, Stephen R. Quake

published 14 Aug 2019

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Evolutionary dynamics of the H7N9 avian influenza virus based on large-scale sequence analysis

Jiasheng Xiong, Ping Zhao, Pengfei Yang, Qingli Yan, Lufang Jiang

published 12 Aug 2019

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Small-RNA analysis of pre-basic mother plants and conserved accessions of plant genetic resources for the presence of viruses

Minna-Liisa Rajamäki, Anne Lemmetty, Jaana Laamanen, Elina Roininen, Archana Vishwakarma, Janne Streng, Satu Latvala, Jari P. T. Valkonen

published 07 Aug 2019

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Identifying genetic markers for a range of phylogenetic utility–From species to family level

Bokyung Choi, Michael D. Crisp, Lyn G. Cook, Karen Meusemann, Robert D. Edwards, Alicia Toon, Carsten Külheim

published 01 Aug 2019

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