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Sequence analysis

DNA barcoding of coastal ray-finned fishes in Vietnam

Pham The Thu, Wen-Chien Huang, Tak-Kei Chou, Nguyen Van Quan, Pham Van Chien, Fan Li, Kwang-Tsao Shao, Te-Yu Liao

published 19 Sep 2019

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Genome-wide identification and expression profile analysis of nuclear factor Y family genes in Sorghum bicolor L. (Moench)

P. Maheshwari, Divya Kummari, Sudhakar Reddy Palakolanu, U. Nagasai Tejaswi, M. Nagaraju, G. Rajasheker, G. Jawahar, N. Jalaja, P. Rathnagiri, P. B. Kavi Kishor

published 19 Sep 2019

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Using DNA barcoding to improve invasive pest identification at U.S. ports-of-entry

Mary J. L. Madden, Robert G. Young, John W. Brown, Scott E. Miller, Andrew J. Frewin, Robert H. Hanner

published 17 Sep 2019

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Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, Robert Jan Brummer, Ida Schoultz, Dirk Repsilber

published 17 Sep 2019

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Development of a quantitative polymerase chain reaction assay and environmental DNA sampling methods for Giant Gartersnake (Thamnophis gigas)

Gregg Schumer, Eric C. Hansen, Paul J. Anders, Scott M. Blankenship

published 16 Sep 2019

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New Mycobacteroides abscessus subsp. massiliense strains with recombinant hsp65 gene laterally transferred from Mycobacteroides abscessus subsp. abscessus: Potential for misidentification of M. abscessus strains with the hsp65-based method

Byoung-Jun Kim, Ga-Na Kim, Bo-Ram Kim, Tae-Sun Shim, Yoon-Hoh Kook, Bum-Joon Kim

published 13 Sep 2019

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Genomic characterization of the complete terpene synthase gene family from Cannabis sativa

Keith D. Allen, Kevin McKernan, Christopher Pauli, Jim Roe, Anthony Torres, Reggie Gaudino

published 12 Sep 2019

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Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment

Kei Kunimasa, Kikuya Kato, Fumio Imamura, Yoji Kukita

published 12 Sep 2019

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ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples

Ardi Tampuu, Zurab Bzhalava, Joakim Dillner, Raul Vicente

published 11 Sep 2019

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Construction of pseudomolecule sequences of Brassica rapa ssp. pekinensis inbred line CT001 and analysis of spontaneous mutations derived via sexual propagation

Jee-Soo Park, Ji-Hyun Park, Young-Doo Park

published 09 Sep 2019

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Homogenous HIV-1 subtype B from the Brazilian Amazon with infrequent diverse BF1 recombinants, subtypes F1 and C among blood donors

Myuki Alfaia Esashika Crispim, Mônica Nogueira da Guarda Reis, Claudia Abrahim, Dagmar Kiesslich, Nelson Fraiji, Gonzalo Bello, Mariane Martins Araújo Stefani

published 09 Sep 2019

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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Juhana I. Kammonen, Olli-Pekka Smolander, Lars Paulin, Pedro A. B. Pereira, Pia Laine, Patrik Koskinen, Jukka Jernvall, Petri Auvinen

published 09 Sep 2019

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Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction

Daniel Gamermann, Arnau Montagud, J. Alberto Conejero, Pedro Fernández de Córdoba, Javier F. Urchueguía

published 05 Sep 2019

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