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Sequence analysis

Biophysicochemical motifs in T cell receptor sequences as a potential biomarker for high-grade serous ovarian carcinoma

Jared Ostmeyer, Elena Lucas, Scott Christley, Jayanthi Lea, Nancy Monson, Jasmin Tiro, Lindsay G. Cowell

published 05 Mar 2020

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Hexaploid sweetpotato (Ipomoea batatas (L.) Lam.) may not be a true type to either auto- or allopolyploid

Ming Gao, Sara Fuentes Soriano, Qinghe Cao, Xinsun Yang, Guquan Lu

published 03 Mar 2020

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Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability

Frank Mannino, Sadie Wisotsky, Sergei L. Kosakovsky Pond, Spencer V. Muse

published 02 Mar 2020

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Differential sequences and single nucleotide polymorphism of exosomal SOX2 DNA in cancer

Manjusha Vaidya, Kiminobu Sugaya

published 24 Feb 2020

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Identification and expression analysis of S-alk(en)yl-L-cysteine sulfoxide lyase isoform genes and determination of allicin contents in Allium species

Vahid Sayadi, Ghasem Karimzadeh, Sajad Rashidi Monfared, Mohammad Reza Naghavi

published 24 Feb 2020

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The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA

David A. Nix, Sabine Hellwig, Christopher Conley, Alun Thomas, Carrie L. Fuertes, Cindy L. Hamil, Preetida J. Bhetariya, Ignacio Garrido-Laguna, Gabor T. Marth, Mary P. Bronner, Hunter R. Underhill

published 21 Feb 2020

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Iron metabolic pathways in the processes of sponge plasticity

Alexander D. Finoshin, Kim I. Adameyko, Kirill V. Mikhailov, Oksana I. Kravchuk, Anton A. Georgiev, Nicolay G. Gornostaev, Igor A. Kosevich, Victor S. Mikhailov, Guzel R. Gazizova, Elena I. Shagimardanova, Oleg A. Gusev, Yulia V. Lyupina

published 21 Feb 2020

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Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein J. Poen, Anne Pohlmann, Clara Amid, Theo M. Bestebroer, Sharon M. Brookes, Ian H. Brown, Helen Everett, Claudia M. E. Schapendonk, Rachel D. Scheuer, Saskia L. Smits, Martin Beer, Ron A. M. Fouchier, Richard J. Ellis

published 20 Feb 2020

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Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, Rita R. Colwell, James L. Olds, Menu B. Leddy

published 13 Feb 2020

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Phylogenetic analysis reveals an ancient gene duplication as the origin of the MdtABC efflux pump

Kamil Górecki, Megan M. McEvoy

published 12 Feb 2020

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Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus

Geoffrey W. Coombs, Sarah L. Baines, Benjamin P. Howden, Krister M. Swenson, Frances G. O’Brien

published 10 Feb 2020

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The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances

Sophie Röhling, Alexander Linne, Jendrik Schellhorn, Morteza Hosseini, Thomas Dencker, Burkhard Morgenstern

published 10 Feb 2020

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Deep-sea amphipods around cobalt-rich ferromanganese crusts: Taxonomic diversity and selection of candidate species for connectivity analysis

Akira Iguchi, Miyuki Nishijima, Yuki Yoshioka, Aika Miyagi, Ryuichi Miwa, Yuichiro Tanaka, Shogo Kato, Takaaki Matsui, Yoshiaki Igarashi, Nobuyuki Okamoto, Atsushi Suzuki

published 06 Feb 2020

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