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Sequence analysis

Genomic characterization of the complete terpene synthase gene family from Cannabis sativa

Keith D. Allen, Kevin McKernan, [ ... ], Reggie Gaudino

Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment

Kei Kunimasa, Kikuya Kato, Fumio Imamura, Yoji Kukita

ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples

Ardi Tampuu, Zurab Bzhalava, Joakim Dillner, Raul Vicente

Construction of pseudomolecule sequences of Brassica rapa ssp. pekinensis inbred line CT001 and analysis of spontaneous mutations derived via sexual propagation

Jee-Soo Park, Ji-Hyun Park, Young-Doo Park

Homogenous HIV-1 subtype B from the Brazilian Amazon with infrequent diverse BF1 recombinants, subtypes F1 and C among blood donors

Myuki Alfaia Esashika Crispim, Mônica Nogueira da Guarda Reis, [ ... ], Mariane Martins Araújo Stefani

gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Juhana I. Kammonen, Olli-Pekka Smolander, [ ... ], Petri Auvinen

Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction

Daniel Gamermann, Arnau Montagud, [ ... ], Javier F. Urchueguía

DIpartite: A tool for detecting bipartite motifs by considering base interdependencies

Mohammad Vahed, Jun-ichi Ishihara, Hiroki Takahashi

Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis

Eunju Kwon, Shankar Raj Devkota, [ ... ], Dong Young Kim

Borrelia reloaded" (PLoS ONE 13(12): e0208432)">Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432)

Radhey S. Gupta

The number of domains in the ribosomal protein S1 as a hallmark of the phylogenetic grouping of bacteria

Andrey V. Machulin, Evgenia I. Deryusheva, Olga M. Selivanova, Oxana V. Galzitskaya

HPC: Hierarchical phylogeny construction

Anindya Das, Xiaoqiu Huang

TreeCluster: Clustering biological sequences using phylogenetic trees

Metin Balaban, Niema Moshiri, [ ... ], Siavash Mirarab

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