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Sequence analysis

Biophysicochemical motifs in T cell receptor sequences as a potential biomarker for high-grade serous ovarian carcinoma

Jared Ostmeyer, Elena Lucas, [ ... ], Lindsay G. Cowell

Hexaploid sweetpotato (Ipomoea batatas (L.) Lam.) may not be a true type to either auto- or allopolyploid

Ming Gao, Sara Fuentes Soriano, [ ... ], Guquan Lu

Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability

Frank Mannino, Sadie Wisotsky, Sergei L. Kosakovsky Pond, Spencer V. Muse

Differential sequences and single nucleotide polymorphism of exosomal SOX2 DNA in cancer

Manjusha Vaidya, Kiminobu Sugaya

Identification and expression analysis of S-alk(en)yl-L-cysteine sulfoxide lyase isoform genes and determination of allicin contents in Allium species

Vahid Sayadi, Ghasem Karimzadeh, Sajad Rashidi Monfared, Mohammad Reza Naghavi

The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA

David A. Nix, Sabine Hellwig, [ ... ], Hunter R. Underhill

Iron metabolic pathways in the processes of sponge plasticity

Alexander D. Finoshin, Kim I. Adameyko, [ ... ], Yulia V. Lyupina

Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein J. Poen, Anne Pohlmann, [ ... ], Richard J. Ellis

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, [ ... ], Menu B. Leddy

Phylogenetic analysis reveals an ancient gene duplication as the origin of the MdtABC efflux pump

Kamil Górecki, Megan M. McEvoy

Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus

Geoffrey W. Coombs, Sarah L. Baines, [ ... ], Frances G. O’Brien

The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances

Sophie Röhling, Alexander Linne, [ ... ], Burkhard Morgenstern

Deep-sea amphipods around cobalt-rich ferromanganese crusts: Taxonomic diversity and selection of candidate species for connectivity analysis

Akira Iguchi, Miyuki Nishijima, [ ... ], Atsushi Suzuki

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