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Sequence analysis

Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information

Koh Onimaru, Osamu Nishimura, Shigehiro Kuraku

published 23 Jul 2020

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Expression from DIF1-motif promoters of hetR and patS is dependent on HetZ and modulated by PatU3 during heterocyst differentiation

Yaru Du, He Zhang, Hong Wang, Shuai Wang, Qiqin Lei, Chao Li, Renqiu Kong, Xudong Xu

published 23 Jul 2020

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The evolutionary history of mariner elements in stalk-eyed flies reveals the horizontal transfer of transposons from insects into the genome of the cnidarian Hydra vulgaris

C. Alastair Grace, Martin Carr

published 13 Jul 2020

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Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing

Phillip R. Myer, Tara G. McDaneld, Larry A. Kuehn, Keith D. Dedonder, Michael D. Apley, Sarah F. Capik, Brian V. Lubbers, Gregory P. Harhay, Dayna M. Harhay, John W. Keele, Madison T. Henniger, Brooke A. Clemmons, Timothy P. L. Smith

published 13 Jul 2020

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Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling

Sarah J. Vancuren, Scott J. Dos Santos, Janet E. Hill, the Maternal Microbiome Legacy Project Team

published 09 Jul 2020

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Purification and characterization of a novel medium-chain ribitol dehydrogenase from a lichen-associated bacterium Sphingomonas sp.

Kiet N. Tran, Nhung Pham, Sei-Heon Jang, ChangWoo Lee

published 08 Jul 2020

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Characterization of two family AA9 LPMOs from Aspergillus tamarii with distinct activities on xyloglucan reveals structural differences linked to cleavage specificity

Antonielle V. Monclaro, Dejan M. Petrović, Gabriel S. C. Alves, Marcos M. C. Costa, Glaucia E. O. Midorikawa, Robert N. G. Miller, Edivaldo X. F. Filho, Vincent G. H. Eijsink, Anikó Várnai

published 08 Jul 2020

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Advantages of an easy-to-use DNA extraction method for minimal-destructive analysis of collection specimens

Franziska Patzold, Alberto Zilli, Anna K. Hundsdoerfer

published 08 Jul 2020

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Diverse patterns of antibody variable gene repertoire disruption in patients with amyloid light chain (AL) amyloidosis

Elaine C. Chen, Samuel Rubinstein, Cinque Soto, Robin G. Bombardi, Samuel B. Day, Luke Myers, Alexey Zaytsev, Mahsa Majedi, R. Frank Cornell, James E. Crowe Jr.

published 07 Jul 2020

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Functional characterization of a new terpene synthase from Plectranthus amboinicus

Nur Suhanawati Ashaari, Mohd Hairul Ab. Rahim, Suriana Sabri, Kok Song Lai, Adelene Ai-Lian Song, Raha Abdul Rahim, Wan Muhamad Asrul Nizam Wan Abdullah, Janna Ong Abdullah

published 02 Jul 2020

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Data-driven network alignment

Shawn Gu, Tijana Milenković

published 02 Jul 2020

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Insights into aphid prey consumption by ladybirds: Optimising field sampling methods and primer design for high throughput sequencing

Lolita Ammann, Rosemary Moorhouse-Gann, Jordan Cuff, Colette Bertrand, Laia Mestre, Nicolás Pérez Hidalgo, Amy Ellison, Felix Herzog, Martin H. Entling, Matthias Albrecht, William O. C. Symondson

published 01 Jul 2020

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Ancestral mitogenome capture of the Southeast Asian banded linsang

Johanna L. A. Paijmans, Axel Barlow, Kirstin Henneberger, Joerns Fickel, Michael Hofreiter, Daniel W. G. Foerster

published 30 Jun 2020

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