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Sequence analysis

Survey of metaproteomics software tools for functional microbiome analysis

Ray Sajulga, Caleb Easterly, Michael Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James Johnson, Bjoern Andreas Gruening, Henning Schiebenhoefer, Carolin A. Kolmeder, Stephan Fuchs, Brook L. Nunn, Joel Rudney, Timothy J. Griffin, Pratik D. Jagtap

published 10 Nov 2020

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Sugarcane mosaic virus mediated changes in cytosine methylation pattern and differentially transcribed fragments in resistance-contrasting sugarcane genotypes

Marcel Fernando da Silva, Marcos Cesar Gonçalves, Michael dos Santos Brito, Cibele Nataliane Medeiros, Ricardo Harakava, Marcos Guimarães de Andrade Landell, Luciana Rossini Pinto

published 09 Nov 2020

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Balancing selection and high genetic diversity of Plasmodium vivax circumsporozoite central region in parasites from Brazilian Amazon and Rio de Janeiro Atlantic Forest

Natália Ketrin Almeida-de-Oliveira, Rebecca de Abreu-Fernandes, Lidiane Lima-Cury, Aline Rosa de Lavigne, Anielle de Pina-Costa, Daiana de Souza Perce-da-Silva, Marcos Catanho, Atila Duque Rossi, Patrícia Brasil, Cláudio Tadeu Daniel-Ribeiro, Maria de Fátima Ferreira-da-Cruz

published 09 Nov 2020

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dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data

Jianhong Ou, Haibo Liu, Niraj K. Nirala, Alexey Stukalov, Usha Acharya, Michael R. Green, Lihua Julie Zhu

published 06 Nov 2020

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Variant analysis of 1,040 SARS-CoV-2 genomes

Eric C. Rouchka, Julia H. Chariker, Donghoon Chung

published 05 Nov 2020

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The genomic structure of the highly-conserved dmrt1 gene in Solea senegalensis (Kaup, 1868) shows an unexpected intragenic duplication

Ismael Cross, Emilio García, María E. Rodríguez, Alberto Arias-Pérez, Silvia Portela-Bens, Manuel A. Merlo, Laureana Rebordinos

published 02 Nov 2020

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Identification of plastid genomic regions inferring species identity from de novo plastid genome assembly of 14 Korean-native Iris species (Iridaceae)

Yang Jae Kang, Soonok Kim, Jungho Lee, Hyosig Won, Gi-Heum Nam, Myounghai Kwak

published 26 Oct 2020

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Ares-GT: Design of guide RNAs targeting multiple genes for CRISPR-Cas experiments

Eugenio Gómez Minguet

published 21 Oct 2020

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Identification of the major rabbit and guinea pig semen coagulum proteins and description of the diversity of the REST gene locus in the mammalian clade Glires

Åke Lundwall, Margareta Persson, Karin Hansson, Magnus Jonsson

published 14 Oct 2020

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Phylogenetic analysis and ontogenetic changes in the cone opsins of the western mosquitofish (Gambusia affinis)

Chia-Hao Chang, Yu-Chun Wang, Yi Ta Shao, Shih-Hui Liu

published 13 Oct 2020

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Emergence of highly pathogenic H5N2 and H7N1 influenza A viruses from low pathogenic precursors by serial passage in ovo

Agnes Tinuke Laleye, Celia Abolnik

published 08 Oct 2020

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Sensor orientation and other factors which increase the blast overpressure reporting errors

Anthony Misistia, Maciej Skotak, Arturo Cardenas, Eren Alay, Namas Chandra, Gary H. Kamimori

published 08 Oct 2020

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Identification and analysis of key genes involved in methyl salicylate biosynthesis in different birch species

Kiran Singewar, Christian R. Moschner, Eberhard Hartung, Matthias Fladung

published 08 Oct 2020

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