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Sequence analysis

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

Robert Kofler, Pablo Orozco-terWengel, [ ... ], Christian Schlötterer

Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections

Stephen J. Salipante, Dhruba J. Sengupta, [ ... ], Noah G. Hoffman

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, [ ... ], Stephen R. Quake

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

Julie D. Thompson, Benjamin Linard, Odile Lecompte, Olivier Poch

Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters

Sachiko Miyake, Sangwan Kim, [ ... ], Takashi Yamamura

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

Natalie Ward, Gabriel Moreno-Hagelsieb

Identification of Combinatorial Patterns of Post-Translational Modifications on Individual Histones in the Mouse Brain

Ry Y. Tweedie-Cullen, Andrea M. Brunner, [ ... ], Isabelle M. Mansuy

Different Binding Properties and Function of CXXC Zinc Finger Domains in Dnmt1 and Tet1

Carina Frauer, Andrea Rottach, [ ... ], Heinrich Leonhardt

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, [ ... ], Sallie W. Chisholm

Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well

Aron J. Fazekas, Kevin S. Burgess, [ ... ], Spencer C. H. Barrett

Evolutionary History of Assassin Bugs (Insecta: Hemiptera: Reduviidae): Insights from Divergence Dating and Ancestral State Reconstruction

Wei Song Hwang, Christiane Weirauch

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

Erik Kristiansson, Jerker Fick, [ ... ], D. G. Joakim Larsson

SeqNLS: Nuclear Localization Signal Prediction Based on Frequent Pattern Mining and Linear Motif Scoring

Jhih-rong Lin, Jianjun Hu

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