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Sequence analysis

From e-voucher to genomic data: Preserving archive specimens as demonstrated with medically important mosquitoes (Diptera: Culicidae) and kissing bugs (Hemiptera: Reduviidae)

Silvia Andrade Justi, John Soghigian, David B. Pecor, Laura Caicedo-Quiroga, Wiriya Rutvisuttinunt, Tao Li, Lori Stevens, Patricia L. Dorn, Brian Wiegmann, Yvonne-Marie Linton

published 25 Feb 2021

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Genome-wide identification and expression analysis of the NCED family in cotton (Gossypium hirsutum L.)

QingHua Li, XianTao Yu, Long Chen, Gang Zhao, ShiZhou Li, Hao Zhou, Yu Dai, Na Sun, YongFei Xie, JunShan Gao, DaHui Li, Xu Sun, Ning Guo

published 25 Feb 2021

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PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks

Seyyede Fatemeh Seyyedsalehi, Mahdieh Soleymani, Hamid R. Rabiee, Mohammad R. K. Mofrad

published 25 Feb 2021

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Detecting SARS-CoV-2 variants with SNP genotyping

Helen Harper, Amanda Burridge, Mark Winfield, Adam Finn, Andrew Davidson, David Matthews, Stephanie Hutchings, Barry Vipond, Nisha Jain, The COVID-19 Genomics UK (COG-UK) Consortium , Keith Edwards, Gary Barker

published 24 Feb 2021

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Genomic approach for conservation and the sustainable management of endangered species of the Amazon

Paola Fazzi-Gomes, Jonas Aguiar, Gleyce Fonseca Cabral, Diego Marques, Helber Palheta, Fabiano Moreira, Marilia Rodrigues, Renata Cavalcante, Jorge Souza, Caio Silva, Igor Hamoy, Sidney Santos

published 24 Feb 2021

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An updated census of the maize TIFY family

Pingdong Sun, Yannan Shi, Aga Guido Okwana Valerio, Eli James Borrego, Qingyun Luo, Jia Qin, Kang Liu, Yuanxin Yan

published 23 Feb 2021

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Cyp33 binds AU-rich RNA motifs via an extended interface that competitively disrupts the gene repressive Cyp33-MLL1 interaction in vitro

Neil R. Lloyd, Deborah S. Wuttke

published 19 Feb 2021

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The analysis on the human protein domain targets and host-like interacting motifs for the MERS-CoV and SARS-CoV/CoV-2 infers the molecular mimicry of coronavirus

Yamelie A. Martínez, Xianwu Guo, Diana P. Portales-Pérez, Gildardo Rivera, Julio E. Castañeda-Delgado, Carlos A. García-Pérez, José A. Enciso-Moreno, Edgar E. Lara-Ramírez

published 17 Feb 2021

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Phylogenetic analysis of the distribution of deadly amatoxins among the little brown mushrooms of the genus Galerina

Brandon Landry, Jeannette Whitton, Anna L. Bazzicalupo, Oldriska Ceska, Mary L. Berbee

published 10 Feb 2021

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Universal barcoding regions, rbcL, matK and trnH-psbA do not discriminate Cinnamomum species in Sri Lanka

C. H. W. M. R. Bhagya Chandrasekara, D. Nathasha U. Naranpanawa, B. Supun Bandusekara, D. K. N. G. Pushpakumara, D. Siril A. Wijesundera, Pradeepa C. G. Bandaranayake

published 10 Feb 2021

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Draft genome sequence of Marssonina coronaria, causal agent of apple blotch, and comparisons with the Marssonina brunnea and Marssonina rosae genomes

Qiang Cheng, Junxiang Chen, Lijuan Zhao

published 05 Feb 2021

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Multithreaded variant calling in elPrep 5

Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Roel Wuyts, Wilfried Verachtert

published 04 Feb 2021

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Herpesvirus surveillance and discovery in zoo-housed ruminants

Teagen G. Partin, Mark D. Schrenzel, Josephine Braun, Carmel L. Witte, Steven V. Kubiski, Justin Lee, Bruce A. Rideout

published 28 Jan 2021

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