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Sequence analysis

A comprehensive estimation of country-level basic reproduction numbers R₀ for COVID-19: Regime regression can automatically estimate the end of the exponential phase in epidemic data

John L. Spouge

published 13 Jul 2021

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Shotgun proteomics of Brassica rapa seed proteins identifies vicilin as a major seed storage protein in the mature seed

Mahmudur Rahman, Qi Guo, Abdul Baten, Ramil Mauleon, Amina Khatun, Lei Liu, Bronwyn J. Barkla

published 09 Jul 2021

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High-resolution genotyping of Lymphogranuloma Venereum (LGV) strains of Chlamydia trachomatis in London using multi-locus VNTR analysis-ompA genotyping (MLVA-ompA)

Chloe Manning, Colette O’Neill, Ian N. Clarke, Monica Rebec, Penelope R. Cliff, Peter Marsh

published 08 Jul 2021

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Structural and functional diversity among Type III restriction-modification systems that confer host DNA protection via methylation of the N4 atom of cytosine

Iain A. Murray, Yvette A. Luyten, Alexey Fomenkov, Nan Dai, Ivan R. Corrêa Jr., William G. Farmerie, Tyson A. Clark, Jonas Korlach, Richard D. Morgan, Richard J. Roberts

published 06 Jul 2021

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Anchoring the T6SS to the cell wall: Crystal structure of the peptidoglycan binding domain of the TagL accessory protein

Van Son Nguyen, Silvia Spinelli, Éric Cascales, Alain Roussel, Christian Cambillau, Philippe Leone

published 02 Jul 2021

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This outcome feels right! subjective evaluations of coin flip outcomes reflect previously stated preferences

Mariela E. Jaffé, Rainer Greifeneder

published 02 Jul 2021

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Characterization of clopyralid resistance in lawn burweed (Soliva sessilis)

Hossein Ghanizadeh, Fengshuo Li, Lulu He, Kerry C. Harrington

published 30 Jun 2021

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The role of internal transcribed spacer 2 secondary structures in classifying mycoparasitic Ampelomyces

Rosa E. Prahl, Shahjahan Khan, Ravinesh C. Deo

published 30 Jun 2021

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A CRISPR-based assay for the study of eukaryotic DNA repair onboard the International Space Station

Sarah Stahl-Rommel, David Li, Michelle Sung, Rebecca Li, Aarthi Vijayakumar, Kutay Deniz Atabay, G. Guy Bushkin, Christian L. Castro, Kevin D. Foley, D. Scott Copeland, Sarah L. Castro-Wallace, Ezequiel Alvarez Saavedra, Emily J. Gleason, Sebastian Kraves

published 30 Jun 2021

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Genome-wide identification, phylogenetic, and expression analysis under abiotic stress conditions of LIM gene family in Medicago sativa L.

Lili Nian, Xuelu Liu, Yingbo Yang, Xiaolin Zhu, Xianfeng Yi, Fasih Ullah Haider

published 30 Jun 2021

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Mining the capacity of human-associated microorganisms to trigger rheumatoid arthritis—A systematic immunoinformatics analysis of T cell epitopes

Jelena Repac, Marija Mandić, Tanja Lunić, Bojan Božić, Biljana Božić Nedeljković

published 29 Jun 2021

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Genome skimming reveals novel plastid markers for the molecular identification of illegally logged African timber species

Maurizio Mascarello, Mario Amalfi, Pieter Asselman, Erik Smets, Olivier J. Hardy, Hans Beeckman, Steven B. Janssens

published 11 Jun 2021

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Geospatial HIV-1 subtype C gp120 sequence diversity and its predicted impact on broadly neutralizing antibody sensitivity

Jyoti Sutar, Suprit Deshpande, Ranajoy Mullick, Nitin Hingankar, Vainav Patel, Jayanta Bhattacharya

published 24 May 2021

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