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Sequence analysis

In silico analysis enabling informed design for genome editing in medicinal cannabis; gene families and variant characterisation

L. Matchett-Oates, S. Braich, G. C. Spangenberg, S. Rochfort, N. O. I. Cogan

published 22 Sep 2021

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Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data

Zachary Stephens, Daniel O’Brien, Mrunal Dehankar, Lewis R. Roberts, Ravishankar K. Iyer, Jean-Pierre Kocher

published 22 Sep 2021

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Verification of Thai ethnobotanical medicine “Kamlang Suea Khrong” driven by multiplex PCR and powerful TLC techniques

Suthira Yanaso, Ampai Phrutivorapongkul, Darunee Hongwiset, Sirivipa Piyamongkol, Aekkhaluck Intharuksa

published 17 Sep 2021

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Development and evaluation of a custom bait design based on 469 single-copy protein-coding genes for exon capture of isopods (Philosciidae: Haloniscus)

Danielle N. Stringer, Terry Bertozzi, Karen Meusemann, Steven Delean, Michelle T. Guzik, Simon M. Tierney, Christoph Mayer, Steven J. B. Cooper, Mohammad Javidkar, Andreas Zwick, Andrew D. Austin

published 17 Sep 2021

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Community development, implementation, and assessment of a NIBLSE bioinformatics sequence similarity learning resource

Adam J. Kleinschmit, Elizabeth F. Ryder, Jacob L. Kerby, Barbara Murdoch, Sam Donovan, Nealy F. Grandgenett, Rachel E. Cook, Chamindika Siriwardana, William Morgan, Mark Pauley, Anne Rosenwald, Eric Triplett, William Tapprich

published 10 Sep 2021

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Establishment of a quadruplex real-time PCR assay to distinguish the fungal pathogens Diaporthe longicolla, D. caulivora, D. eres, and D. novem on soybean

Behnoush Hosseini, Ralf T. Voegele, Tobias I. Link

published 10 Sep 2021

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Fungus-originated glucanase and monooxygenase genes in creeping bent grass (Agrostis stolonifera L.)

Yugo Watanabe, German C. Spangenberg, Hiroshi Shinozuka

published 10 Sep 2021

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Immunogenic amino acid motifs and linear epitopes of COVID-19 mRNA vaccines

Adam V. Wisnewski, Carrie A. Redlich, Jian Liu, Kathy Kamath, Queenie-Ann Abad, Richard F. Smith, Louis Fazen, Romero Santiago, Julian Campillo Luna, Brian Martinez, Elizabeth Baum-Jones, Rebecca Waitz, Winston A. Haynes, John C. Shon

published 09 Sep 2021

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Serological investigation and genotyping of Mycobacterium avium subsp. paratuberculosis in sheep and goats in Inner Mongolia, China

Li Zhao, Yu Wang, Jin-Ling Wang, Wei-Hong Zhao, Hui-Xin Cheng, Yi-Min Ma, Hai-Liang Chai, Zhan-Sheng Zhang, Li-Feng Wang, Zeng-Qiang Miao, Yu-Lin Ding, Jirintai Sulijid, Guang-Hui Dang, Shu-Ying Liu, Feng-Long Wang, Si-Guo Liu, Yong-Hong Liu

published 07 Sep 2021

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Exploring the cytotoxic mechanisms of Pediocin PA-1 towards HeLa and HT29 cells by comparison to known bacteriocins: Microcin E492, enterocin heterodimer and Divercin V41

George P. Buss, Cornelia M. Wilson

published 02 Sep 2021

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Identification and in-silico characterization of taxadien-5α-ol-O-acetyltransferase (TDAT) gene in Corylus avellana L.

Mona Raeispour Shirazi, Sara Alsadat Rahpeyma, Sajad Rashidi Monfared, Jafar Zolala, Azadeh Lohrasbi-Nejad

published 27 Aug 2021

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Plastid phylogenomics of Pleurothallidinae (Orchidaceae): Conservative plastomes, new variable markers, and comparative analyses of plastid, nuclear, and mitochondrial data

Anna Victoria Silvério R. Mauad, Leila do Nascimento Vieira, Valter Antônio de Baura, Eduardo Balsanelli, Emanuel Maltempi de Souza, Mark W. Chase, Eric de Camargo Smidt

published 27 Aug 2021

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The plastome sequence of Bactris gasipaes and evolutionary analysis in tribe Cocoseae (Arecaceae)

Raquel Santos da Silva, Charles Roland Clement, Eduardo Balsanelli, Valter Antonio de Baura, Emanuel Maltempi de Souza, Hugo Pacheco de Freitas Fraga, Leila do Nascimento Vieira

published 24 Aug 2021

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