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Sequence analysis

Sequence analysis and plasmid mobilization of a 6.6-kb kanamycin resistance plasmid, pSNC3-Kan, from a Salmonella enterica serotype Newport isolate

Chin-Yi Chen, Ly-Huong T. Nguyen, Terence P. Strobaugh Jr.

published 14 Jul 2022

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Transcriptome of the coralline alga Calliarthron tuberculosum (Corallinales, Rhodophyta) reveals convergent evolution of a partial lignin biosynthesis pathway

Jan Y. Xue, Katharine R. Hind, Matthew A. Lemay, Andrea Mcminigal, Emma Jourdain, Cheong Xin Chan, Patrick T. Martone

published 14 Jul 2022

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Proposal of Smith-Waterman algorithm on FPGA to accelerate the forward and backtracking steps

Fabio F. de Oliveira, Leonardo A. Dias, Marcelo A. C. Fernandes

published 30 Jun 2022

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Functional classification and validation of yeast prenylation motifs using machine learning and genetic reporters

Brittany M. Berger, Wayland Yeung, Arnav Goyal, Zhongliang Zhou, Emily R. Hildebrandt, Natarajan Kannan, Walter K. Schmidt

published 24 Jun 2022

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SHIMS 3.0: Highly efficient single-haplotype iterative mapping and sequencing using ultra-long nanopore reads

Daniel W. Bellott, Ting-Jan Cho, Emily K. Jackson, Helen Skaletsky, Jennifer F. Hughes, David C. Page

published 14 Jun 2022

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CView: A network based tool for enhanced alignment visualization

Raquel Linheiro, Stephen Sabatino, Diana Lobo, John Archer

published 13 Jun 2022

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Characterization of the genome and silk-gland transcriptomes of Darwin’s bark spider (Caerostris darwini)

Paul L. Babb, Matjaž Gregorič, Nicholas F. Lahens, David N. Nicholson, Cheryl Y. Hayashi, Linden Higgins, Matjaž Kuntner, Ingi Agnarsson, Benjamin F. Voight

published 06 Jun 2022

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The extant immunoglobulin superfamily, member 1 gene results from an ancestral gene duplication in eutherian mammals

Courtney L. Smith, Paul M. Harrison, Daniel J. Bernard

published 02 Jun 2022

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Complex protein interactions mediate Drosophila Lar function in muscle tissue

Jessica Kawakami, David Brooks, Rana Zalmai, Steven D. Hartson, Samuel Bouyain, Erika R. Geisbrecht

published 27 May 2022

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TextFormats: Simplifying the definition and parsing of text formats in bioinformatics

Giorgio Gonnella

published 26 May 2022

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PltRNAdb: Plant transfer RNA database

Morad M. Mokhtar, Achraf EL Allali

published 23 May 2022

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Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding

Alejandro Damian-Serrano, Elizabeth D. Hetherington, C. Anela Choy, Steven H. D. Haddock, Alexandra Lapides, Casey W. Dunn

published 20 May 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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