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Sequence analysis

A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples

Betzaida Cuevas-Córdoba, Cristóbal Fresno, [ ... ], Xavier Soberón

The GH19 Engineering Database: Sequence diversity, substrate scope, and evolution in glycoside hydrolase family 19

Marco Orlando, Patrick C. F. Buchholz, Marina Lotti, Jürgen Pleiss

Single nucleotide polymorphisms and copy-number variations in the Trypanosoma brucei repeat (TBR) sequence can be used to enhance amplification and genotyping of Trypanozoon strains

Nick Van Reet, Pati Patient Pyana, [ ... ], Philippe Büscher

Comprehensive mutagenesis to identify amino acid residues contributing to the difference in thermostability between two originally thermostable ancestral proteins

Satoshi Akanuma, Minako Yamaguchi, Akihiko Yamagishi

Genome-wide identification, structural and gene expression analysis of the nitrate transporters (NRTs) family in potato (Solanum tuberosum L.)

Jingying Zhang, Zhijun Han, [ ... ], Yu Zhu Han

Expanding the clinical phenotype associated with NIPAL4 mutation: Study of a Tunisian consanguineous family with erythrokeratodermia variabilis—Like Autosomal Recessive Congenital Ichthyosis

Cherine Charfeddine, Nadia Laroussi, [ ... ], Houda Hammami-Ghorbel

Qualitative lysine crotonylome analysis in the ovarian tissue of Harmonia axyridis (Pallas)

Changying Zheng, Lijuan Sun

Predicting drug targets by homology modelling of Pseudomonas aeruginosa proteins of unknown function

Nikolina Babic, Filip Kovacic

Diversity of fungal pathogens associated with loquat and development of novel virulence scales

Muhammad Fahim Abbas, Sana Batool, [ ... ], Mohammad Javed Ansari

Predicting PY motif-mediated protein-protein interactions in the Nedd4 family of ubiquitin ligases

A. Katherine Hatstat, Michael D. Pupi, Dewey G. McCafferty

Correspondence of aCGH and long-read genome assembly for detection of copy number differences: A proof-of-concept with cichlid genomes

Gabriel A. Preising, Joshua J. Faber-Hammond, Suzy C. P. Renn

Bird nests as botanical time capsules: DNA barcoding identifies the contents of contemporary and historical nests

Alex Rinkert, Tracy M. Misiewicz, [ ... ], Justen B. Whittall

easyFulcrum: An R package to process and analyze ecological sampling data generated using the Fulcrum mobile application

Matteo Di Bernardo, Timothy A. Crombie, Daniel E. Cook, Erik C. Andersen

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