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Sequence analysis

SP⁵: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model

Wei Zhang, Song Liu, Yaoqi Zhou

published 04 Jun 2008

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Analysis of the EIAV Rev-Responsive Element (RRE) Reveals a Conserved RNA Motif Required for High Affinity Rev Binding in Both HIV-1 and EIAV

Jae-Hyung Lee, Gloria Culver, Susan Carpenter, Drena Dobbs

published 04 Jun 2008

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iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources

Ivo D. Dinov, Daniel Rubin, William Lorensen, Jonathan Dugan, Jeff Ma, Shawn Murphy, Beth Kirschner, William Bug, Michael Sherman, Aris Floratos, David Kennedy, H. V. Jagadish, Jeanette Schmidt, Brian Athey, Andrea Califano, Mark Musen, Russ Altman, Ron Kikinis, Isaac Kohane, Scott Delp, D. Stott Parker, Arthur W. Toga

published 28 May 2008

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Highly Conserved Regimes of Neighbor-Base-Dependent Mutation Generated the Background Primary-Structural Heterogeneities along Vertebrate Chromosomes

Marcos A. Antezana, I. King Jordan

published 14 May 2008

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Mechanistic Insights into a Novel Exporter-Importer System of Mycobacterium tuberculosis Unravel Its Role in Trafficking of Iron

Aisha Farhana, Sandeep Kumar, Shailendra S. Rathore, Prahlad C. Ghosh, Nasreen Z. Ehtesham, Anil K. Tyagi, Seyed E. Hasnain

published 07 May 2008

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The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

Martina Proell, Stefan J. Riedl, Jörg H. Fritz, Ana M. Rojas, Robert Schwarzenbacher

published 30 Apr 2008

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Characterization of Clinically-Attenuated Burkholderia mallei by Whole Genome Sequencing: Candidate Strain for Exclusion from Select Agent Lists

Steven E. Schutzer, Linda R. K. Schlater, Catherine M. Ronning, David DeShazer, Benjamin J. Luft, John J. Dunn, Jacques Ravel, Claire M. Fraser-Liggett, William C. Nierman

published 30 Apr 2008

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Evidence for the Intense Exchange of MazG in Marine Cyanophages by Horizontal Gene Transfer

Michael J. Bryan, Nigel J. Burroughs, Edward M. Spence, Martha R. J. Clokie, Nicholas H. Mann, Samantha J. Bryan

published 23 Apr 2008

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The T7-Primer Is a Source of Experimental Bias and Introduces Variability between Microarray Platforms

Ron M. Kerkhoven, Daoud Sie, Marja Nieuwland, Mike Heimerikx, Jorma De Ronde, Wim Brugman, Arno Velds

published 23 Apr 2008

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Nature of Protein Family Signatures: Insights from Singular Value Analysis of Position-Specific Scoring Matrices

Akira R. Kinjo, Haruki Nakamura

published 09 Apr 2008

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Alignment of Non-Covalent Interactions at Protein-Protein Interfaces

Hongbo Zhu, Ingolf Sommer, Thomas Lengauer, Francisco S. Domingues

published 02 Apr 2008

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The Airborne Metagenome in an Indoor Urban Environment

Susannah G. Tringe, Tao Zhang, Xuguo Liu, Yiting Yu, Wah Heng Lee, Jennifer Yap, Fei Yao, Sim Tiow Suan, Seah Keng Ing, Matthew Haynes, Forest Rohwer, Chia Lin Wei, Patrick Tan, James Bristow, Edward M. Rubin, Yijun Ruan

published 02 Apr 2008

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Distinguishing Molecular Features and Clinical Characteristics of a Putative New Rhinovirus Species, Human Rhinovirus C (HRV C)

Peter McErlean, Laura A. Shackelton, Emily Andrews, Dale R. Webster, Stephen B. Lambert, Michael D. Nissen, Theo P. Sloots, Ian M. Mackay

published 02 Apr 2008

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