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Sequence analysis

Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression

André Boorsma, Xiang-Jun Lu, [ ... ], Harmen J. Bussemaker

Small Deletion Variants Have Stable Breakpoints Commonly Associated with Alu Elements

Adam J. de Smith, Robin G. Walters, [ ... ], Alexandra I. F. Blakemore

Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

A Translation Initiation Element Specific to mRNAs with Very Short 5′UTR that Also Regulates Transcription

Rofa Elfakess, Rivka Dikstein

Horizontal Gene Transfers Link a Human MRSA Pathogen to Contagious Bovine Mastitis Bacteria

Thomas Brody, Amarendra S. Yavatkar, [ ... ], Ward F. Odenwald

Bioactive Endophytes Warrant Intensified Exploration and Conservation

Stephen A. Smith, David C. Tank, [ ... ], Scott A. Strobel

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, [ ... ], Ian Joint

Relaxation of Selective Constraints Causes Independent Selenoprotein Extinction in Insect Genomes

Charles E. Chapple, Roderic Guigó

Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome

Ani Qu, Jennifer M. Brulc, [ ... ], Bryan A. White

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

Luiz Gustavo Guedes Corrêa, Diego Mauricio Riaño-Pachón, [ ... ], Michel Vincentz

Transthyretin Protects against A-Beta Peptide Toxicity by Proteolytic Cleavage of the Peptide: A Mechanism Sensitive to the Kunitz Protease Inhibitor

Rita Costa, Frederico Ferreira-da-Silva, Maria J. Saraiva, Isabel Cardoso

Evolutionary Origins and Functions of the Carotenoid Biosynthetic Pathway in Marine Diatoms

Sacha Coesel, Miroslav Oborník, [ ... ], Chris Bowler

Preservation of Genes Involved in Sterol Metabolism in Cholesterol Auxotrophs: Facts and Hypotheses

Giovanna Vinci, Xuhua Xia, Reiner A. Veitia

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