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Sequence analysis

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function

Sankaran Sandhya, Saane Sudha Rani, [ ... ], Ramanathan Sowdhamini

The Oncogenic EWS-FLI1 Protein Binds In Vivo GGAA Microsatellite Sequences with Potential Transcriptional Activation Function

Noëlle Guillon, Franck Tirode, [ ... ], Olivier Delattre

Role of 3′UTRs in the Translation of mRNAs Regulated by Oncogenic eIF4E—A Computational Inference

Arti N. Santhanam, Eckart Bindewald, [ ... ], Bruce A. Shapiro

RBF-TSS: Identification of Transcription Start Site in Human Using Radial Basis Functions Network and Oligonucleotide Positional Frequencies

Rami N. Mahdi, Eric C. Rouchka

Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Shinichi Sunagawa, Michael K. DeSalvo, [ ... ], Mónica Medina

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, [ ... ], Abdu F. Azad

The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

Transcript-Specific Expression Profiles Derived from Sequence-Based Analysis of Standard Microarrays

Anton G. Moll, Maja T. Lindenmeyer, [ ... ], Clemens D. Cohen

Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

Structure of the Archaeal Pab87 Peptidase Reveals a Novel Self-Compartmentalizing Protease Family

Vanessa Delfosse, Eric Girard, [ ... ], Claudine Mayer

Computing Highly Correlated Positions Using Mutual Information and Graph Theory for G Protein-Coupled Receptors

Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow

Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Paolo Fontana, Alessandro Cestaro, [ ... ], Stefano Toppo

Transcription Factor Binding Sites Are Genetic Determinants of Retroviral Integration in the Human Genome

Barbara Felice, Claudia Cattoglio, [ ... ], Fulvio Mavilio

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