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Sequence analysis

Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays

Jennifer G. Mulle, Viren C. Patel, [ ... ], Michael E. Zwick

Transcription of Human Resistin Gene Involves an Interaction of Sp1 with Peroxisome Proliferator-Activating Receptor Gamma (PPARγ)

Anil K. Singh, Aruna Battu, [ ... ], Nasreen Z. Ehtesham

Arabidopsis thaliana GYRB3 Does Not Encode a DNA Gyrase Subunit

Katherine M. Evans-Roberts, Christian Breuer, [ ... ], Anthony Maxwell

A Systems Biology Approach to Transcription Factor Binding Site Prediction

Xiang Zhou, Pavel Sumazin, Presha Rajbhandari, Andrea Califano

Discovery of Phytophthora infestans Genes Expressed in Planta through Mining of cDNA Libraries

Roberto Sierra, Luis M. Rodríguez-R, [ ... ], Silvia Restrepo

4E10-Resistant HIV-1 Isolated from Four Subjects with Rare Membrane-Proximal External Region Polymorphisms

Kyle J. Nakamura, Johannes S. Gach, [ ... ], Grace M. Aldrovandi

Dinucleotide Weight Matrices for Predicting Transcription Factor Binding Sites: Generalizing the Position Weight Matrix

Rahul Siddharthan

NSs Encoded by Groundnut Bud Necrosis Virus Is a Bifunctional Enzyme

Bhushan Lokesh, Panigrahi R. Rashmi, [ ... ], Handanahal S. Savithri

FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues

Ashish V. Tendulkar, Martin Krallinger, [ ... ], Alfonso Valencia

Evolutionary Constraints Acting on DDX3X Protein Potentially Interferes with Rev-Mediated Nuclear Export of HIV-1 RNA

Deepak Sharma, Jayanta Bhattacharya

Discovery of Novel MicroRNAs in Female Reproductive Tract Using Next Generation Sequencing

Chad J. Creighton, Ashley L. Benham, [ ... ], Preethi H. Gunaratne

An Extended Nomenclature for Mammalian V-ATPase Subunit Genes and Splice Variants

Kevin C. Miranda, Fiona E. Karet, Dennis Brown

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

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