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Sequence analysis

De Novo Assembly of the Complete Genome of an Enhanced Electricity-Producing Variant of Geobacter sulfurreducens Using Only Short Reads

Harish Nagarajan, Jessica E. Butler, [ ... ], Christian L. Barrett

Nucleic Acid Template and the Risk of a PCR-Induced HIV-1 Drug Resistance Mutation

Vici Varghese, Elijah Wang, [ ... ], Robert W. Shafer

Oligonucleotide Sequence Motifs as Nucleosome Positioning Signals

Clayton K. Collings, Alfonso G. Fernandez, [ ... ], John N. Anderson

W-Curve Alignments for HIV-1 Genomic Comparisons

Douglas J. Cork, Steven Lembark, [ ... ], Jerome H. Kim

Validation of Coevolving Residue Algorithms via Pipeline Sensitivity Analysis: ELSC and OMES and ZNMI, Oh My!

Christopher A. Brown, Kevin S. Brown

Genome-Wide Identification of Calcium-Response Factor (CaRF) Binding Sites Predicts a Role in Regulation of Neuronal Signaling Pathways

Andreas R. Pfenning, Tae-Kyung Kim, [ ... ], Anne E. West

Identification of Novel Pathogenicity Loci in Clostridium perfringens Strains That Cause Avian Necrotic Enteritis

Dion Lepp, Bryan Roxas, [ ... ], John F. Prescott

A Data Integration Approach to Mapping OCT4 Gene Regulatory Networks Operative in Embryonic Stem Cells and Embryonal Carcinoma Cells

Marc Jung, Hedi Peterson, [ ... ], James Adjaye

Allelic Gene Structure Variations in Anopheles gambiae Mosquitoes

Jun Li, Jose M. C. Ribeiro, Guiyun Yan

Characterization of a Group of MITEs with Unusual Features from Two Coral Genomes

Shi Wang, Lingling Zhang, Eli Meyer, Mikhail V. Matz

Phylogeny Disambiguates the Evolution of Heat-Shock cis-Regulatory Elements in Drosophila

Sibo Tian, Robert A. Haney, Martin E. Feder

Synthesis of 5-Hydroxyectoine from Ectoine: Crystal Structure of the Non-Heme Iron(II) and 2-Oxoglutarate-Dependent Dioxygenase EctD

Klaus Reuter, Marco Pittelkow, [ ... ], Erhard Bremer

Assessing the Value of DNA Barcodes and Other Priority Gene Regions for Molecular Phylogenetics of Lepidoptera

John James Wilson

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