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Sequence analysis

Evolution of Bacterial Phosphoglycerate Mutases: Non-Homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers

Jeremy M. Foster, Paul J. Davis, Sylvine Raverdy, Marion H. Sibley, Elisabeth A. Raleigh, Sanjay Kumar, Clotilde K. S. Carlow

published 26 Oct 2010

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The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, Simona Di Giambenedetto, Laura Bracciale, Massimiliano Fabbiani, Roberto Cauda, Marco Salemi

published 25 Oct 2010

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Identification and Nearly Full-Length Genome Characterization of Novel Porcine Bocaviruses

Wei-xia Cheng, Jin-song Li, Can-ping Huang, Dong-ping Yao, Na Liu, Shu-xian Cui, Yu Jin, Zhao-jun Duan

published 25 Oct 2010

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Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

published 22 Oct 2010

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Development of a Low Bias Method for Characterizing Viral Populations Using Next Generation Sequencing Technology

Stephanie M. Willerth, Hélder A. M. Pedro, Lior Pachter, Laurent M. Humeau, Adam P. Arkin, David V. Schaffer

published 22 Oct 2010

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The 14-3-3ζ Protein Binds to the Cell Adhesion Molecule L1, Promotes L1 Phosphorylation by CKII and Influences L1-Dependent Neurite Outgrowth

Elisa M. Ramser, Gerrit Wolters, Galina Dityateva, Alexander Dityatev, Melitta Schachner, Thomas Tilling

published 18 Oct 2010

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An Integrated Physical, Genetic and Cytogenetic Map of Brachypodium distachyon, a Model System for Grass Research

Melanie Febrer, Jose Luis Goicoechea, Jonathan Wright, Neil McKenzie, Xiang Song, Jinke Lin, Kristi Collura, Marina Wissotski, Yeisoo Yu, Jetty S. S. Ammiraju, Elzbieta Wolny, Dominika Idziak, Alexander Betekhtin, Dave Kudrna, Robert Hasterok, Rod A. Wing, Michael W. Bevan

published 18 Oct 2010

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Transcriptional and Post-Transcriptional Regulation of the Escherichia coli luxS mRNA; Involvement of the sRNA MicA

Klas I. Udekwu

published 18 Oct 2010

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A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

Alexander L. Greninger, Eunice C. Chen, Taylor Sittler, Alex Scheinerman, Nareg Roubinian, Guixia Yu, Edward Kim, Dylan R. Pillai, Cyril Guyard, Tony Mazzulli, Pavel Isa, Carlos F. Arias, John Hackett Jr, Gerald Schochetman, Steve Miller, Patrick Tang, Charles Y. Chiu

published 18 Oct 2010

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Bioinformatics Describes Novel Loci for High Resolution Discrimination of Leptospira Isolates

Gustavo M. Cerqueira, Alan J. A. McBride, Rudy A. Hartskeerl, Niyaz Ahmed, Odir A. Dellagostin, Marcus R. Eslabão, Ana L. T. O. Nascimento

published 15 Oct 2010

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Genome-Wide Comparative Gene Family Classification

Christian Frech, Nansheng Chen

published 15 Oct 2010

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Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

Chia-Han Chu, Wei-Cheng Lo, Hsin-Wei Wang, Yen-Chu Hsu, Jenn-Kang Hwang, Ping-Chiang Lyu, Tun-Wen Pai, Chuan Yi Tang

published 14 Oct 2010

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Two Lamprey Hedgehog Genes Share Non-Coding Regulatory Sequences and Expression Patterns with Gnathostome Hedgehogs

Shungo Kano, Jin-Hua Xiao, Joana Osório, Marc Ekker, Yavor Hadzhiev, Ferenc Müller, Didier Casane, Ghislaine Magdelenat, Sylvie Rétaux

published 13 Oct 2010

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