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Sequence analysis

Evolutionary and Structural Features of the C2, V3 and C3 Envelope Regions Underlying the Differences in HIV-1 and HIV-2 Biology and Infection

Helena Barroso, Pedro Borrego, [ ... ], Nuno Taveira

Genomewide Analyses Define Different Modes of Transcriptional Regulation by Peroxisome Proliferator-Activated Receptor-β/δ (PPARβ/δ)

Till Adhikary, Kerstin Kaddatz, [ ... ], Rolf Müller

Genome-Wide Polymorphism and Comparative Analyses in the White-Tailed Deer (Odocoileus virginianus): A Model for Conservation Genomics

Christopher M. Seabury, Eric K. Bhattarai, [ ... ], Paul M. Seabury

Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties

Lele Hu, Tao Huang, [ ... ], Kuo-Chen Chou

Characterization of the Deleted in Autism 1 Protein Family: Implications for Studying Cognitive Disorders

Azhari Aziz, Sean P. Harrop, Naomi E. Bishop

An FPT Approach for Predicting Protein Localization from Yeast Genomic Data

Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

Robert Kofler, Pablo Orozco-terWengel, [ ... ], Christian Schlötterer

Antarctic Krill 454 Pyrosequencing Reveals Chaperone and Stress Transcriptome

Melody S. Clark, Michael A. S. Thorne, [ ... ], Stephen Moore

Sequence Alignment, Mutual Information, and Dissimilarity Measures for Constructing Phylogenies

Orion Penner, Peter Grassberger, Maya Paczuski

Evolutionary Distances in the Twilight Zone—A Rational Kernel Approach

Roland F. Schwarz, William Fletcher, [ ... ], Florian Markowetz

Robust Computational Analysis of rRNA Hypervariable Tag Datasets

Maksim Sipos, Patricio Jeraldo, [ ... ], Nigel Goldenfeld

Crystal Structure of UBA2^ufd-Ubc9: Insights into E1-E2 Interactions in Sumo Pathways

Jing Wang, Asad M. Taherbhoy, [ ... ], Brenda A. Schulman

Comparative Magnitude of Cross-Strain Conservation of HIV Variable Loop Neutralization Epitopes

James Swetnam, Evgeny Shmelkov, Susan Zolla-Pazner, Timothy Cardozo

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