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Sequence analysis

Proposal of Smith-Waterman algorithm on FPGA to accelerate the forward and backtracking steps

Fabio F. de Oliveira, Leonardo A. Dias, Marcelo A. C. Fernandes

Functional classification and validation of yeast prenylation motifs using machine learning and genetic reporters

Brittany M. Berger, Wayland Yeung, [ ... ], Walter K. Schmidt

SHIMS 3.0: Highly efficient single-haplotype iterative mapping and sequencing using ultra-long nanopore reads

Daniel W. Bellott, Ting-Jan Cho, [ ... ], David C. Page

CView: A network based tool for enhanced alignment visualization

Raquel Linheiro, Stephen Sabatino, Diana Lobo, John Archer

Characterization of the genome and silk-gland transcriptomes of Darwin’s bark spider (Caerostris darwini)

Paul L. Babb, Matjaž Gregorič, [ ... ], Benjamin F. Voight

The extant immunoglobulin superfamily, member 1 gene results from an ancestral gene duplication in eutherian mammals

Courtney L. Smith, Paul M. Harrison, Daniel J. Bernard

Complex protein interactions mediate Drosophila Lar function in muscle tissue

Jessica Kawakami, David Brooks, [ ... ], Erika R. Geisbrecht

TextFormats: Simplifying the definition and parsing of text formats in bioinformatics

Giorgio Gonnella

PltRNAdb: Plant transfer RNA database

Morad M. Mokhtar, Achraf EL Allali

Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding

Alejandro Damian-Serrano, Elizabeth D. Hetherington, [ ... ], Casey W. Dunn

MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

Genome-wide exploration of sugar transporter (sweet) family proteins in Fabaceae for Sustainable protein and carbon source

Nisha Singh, Megha Ujinwal, [ ... ], Ahmed A. Kenawy

An ancestral genomic sequence that serves as a nucleation site for de novo gene birth

Nicholas Delihas

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