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Sequence analysis

Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data

Niamh E. Redmond, Jean Raleigh, [ ... ], Grace P. McCormack

AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses

Jiantao Shi, Wentao Yang, [ ... ], Kankan Wang

Determinants, Discriminants, Conserved Residues - A Heuristic Approach to Detection of Functional Divergence in Protein Families

Kavitha Bharatham, Zong Hong Zhang, Ivana Mihalek

High-Throughput Sequencing of Three Lemnoideae (Duckweeds) Chloroplast Genomes from Total DNA

Wenqin Wang, Joachim Messing

Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters

Ionas Erb, Erik van Nimwegen

Selection in Coastal Synechococcus (Cyanobacteria) Populations Evaluated from Environmental Metagenomes

Vera Tai, Art F. Y. Poon, Ian T. Paulsen, Brian Palenik

Tm1: A Mutator/Foldback Transposable Element Family in Root-Knot Nematodes

Stephen M. Gross, Valerie M. Williamson

Genetic Analysis of a Novel Human Adenovirus with a Serologically Unique Hexon and a Recombinant Fiber Gene

Elizabeth B. Liu, Leonardo Ferreyra, [ ... ], Morris S. Jones

Recombining Low Homology, Functionally Rich Regions of Bacterial Subtilisins by Combinatorial Fragment Exchange

D. Dafydd Jones

Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results

Niina Haiminen, David N. Kuhn, Laxmi Parida, Isidore Rigoutsos

Detection of Naegleria Species in Environmental Samples from Peninsular Malaysia

Init Ithoi, Arine Fadzlun Ahmad, [ ... ], Joon Wah Mak

Tree-Based Position Weight Matrix Approach to Model Transcription Factor Binding Site Profiles

Yingtao Bi, Hyunsoo Kim, Ravi Gupta, Ramana V. Davuluri

Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster

Muying Ying, Xiaotian Huang, [ ... ], Kemin Jie

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