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Sequence analysis

Species-Specific Codon Context Rules Unveil Non-Neutrality Effects of Synonymous Mutations

Gabriela R. Moura, Miguel Pinheiro, Adelaide Freitas, José L. Oliveira, Jörg C. Frommlet, Laura Carreto, Ana R. Soares, Ana R. Bezerra, Manuel A. S. Santos

published 26 Oct 2011

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An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, Pedro I. Hidalgo-Yanes, Yunierkis Pérez-Castillo, Reinaldo Molina-Ruiz, Kathleen Marchal, Vítor Vasconcelos, Agostinho Antunes

published 26 Oct 2011

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Molecular Diversity of Fungal Phylotypes Co-Amplified Alongside Nematodes from Coastal and Deep-Sea Marine Environments

Punyasloke Bhadury, Holly Bik, John D. Lambshead, Melanie C. Austen, Gary R. Smerdon, Alex D. Rogers

published 26 Oct 2011

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MysiRNA-Designer: A Workflow for Efficient siRNA Design

Mohamed Mysara, Jonathan M. Garibaldi, Mahmoud ElHefnawi

published 26 Oct 2011

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Tissue-Restricted Expression of Nrf2 and Its Target Genes in Zebrafish with Gene-Specific Variations in the Induction Profiles

Hitomi Nakajima, Yaeko Nakajima-Takagi, Tadayuki Tsujita, Shin-Ichi Akiyama, Takeshi Wakasa, Katsuki Mukaigasa, Hiroshi Kaneko, Yutaka Tamaru, Masayuki Yamamoto, Makoto Kobayashi

published 25 Oct 2011

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Exploring the Diversity of Gardnerella vaginalis in the Genitourinary Tract Microbiota of Monogamous Couples Through Subtle Nucleotide Variation

A. Murat Eren, Marcela Zozaya, Christopher M. Taylor, Scot E. Dowd, David H. Martin, Michael J. Ferris

published 25 Oct 2011

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Identification of Antigens Specific to Non-Tuberculous Mycobacteria: The Mce Family of Proteins as a Target of T Cell Immune Responses

Anna M. Checkley, David H. Wyllie, Thomas J. Scriba, Tanya Golubchik, Adrian V. S. Hill, Willem A. Hanekom, Helen McShane

published 25 Oct 2011

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ReCombine: A Suite of Programs for Detection and Analysis of Meiotic Recombination in Whole-Genome Datasets

Carol M. Anderson, Stacy Y. Chen, Michelle T. Dimon, Ashwini Oke, Joseph L. DeRisi, Jennifer C. Fung

published 25 Oct 2011

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A Method for Metagenomics of Helicobacter pylori from Archived Formalin-Fixed Gastric Biopsies Permitting Longitudinal Studies of Carcinogenic Risk

Zongli Zheng, Anders F. Andersson, Weimin Ye, Olof Nyrén, Staffan Normark, Lars Engstrand

published 21 Oct 2011

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Identification of Allele-Specific RNAi Effectors Targeting Genetic Forms of Parkinson's Disease

Christopher R. Sibley, Matthew J. A. Wood

published 21 Oct 2011

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rbcL and matK Earn Two Thumbs Up as the Core DNA Barcode for Ferns

Fay-Wei Li, Li-Yaung Kuo, Carl J. Rothfels, Atsushi Ebihara, Wen-Liang Chiou, Michael D. Windham, Kathleen M. Pryer

published 20 Oct 2011

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Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

Samuel V. Angiuoli, James R. White, Malcolm Matalka, Owen White, W. Florian Fricke

published 19 Oct 2011

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A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq

Lin Wang, Yaqing Si, Lauren K. Dedow, Ying Shao, Peng Liu, Thomas P. Brutnell

published 19 Oct 2011

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