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Sequence analysis

Identification of Genome-Wide Variations among Three Elite Restorer Lines for Hybrid-Rice

Shuangcheng Li, Shiquan Wang, Qiming Deng, Aiping Zheng, Jun Zhu, Huainian Liu, Lingxia Wang, Fengyan Gao, Ting Zou, Bin Huang, Xuemei Cao, Lizhi Xu, Chuang Yu, Peng Ai, Ping Li

published 23 Feb 2012

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TEPITOPEpan: Extending TEPITOPE for Peptide Binding Prediction Covering over 700 HLA-DR Molecules

Lianming Zhang, Yiqing Chen, Hau-San Wong, Shuigeng Zhou, Hiroshi Mamitsuka, Shanfeng Zhu

published 23 Feb 2012

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First Dating of a Recombination Event in Mammalian Tick-Borne Flaviviruses

Yann Bertrand, Mats Töpel, Annelie Elväng, Wessam Melik, Magnus Johansson

published 22 Feb 2012

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A Format for Phylogenetic Placements

Frederick A. Matsen, Noah G. Hoffman, Aaron Gallagher, Alexandros Stamatakis

published 22 Feb 2012

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Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes

Dirk Krüger, Danuta Kapturska, Christiane Fischer, Rolf Daniel, Tesfaye Wubet

published 21 Feb 2012

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Challenges in Whole Exome Sequencing: An Example from Hereditary Deafness

Asli Sirmaci, Yvonne J. K. Edwards, Hatice Akay, Mustafa Tekin

published 21 Feb 2012

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Gis1 and Rph1 Regulate Glycerol and Acetate Metabolism in Glucose Depleted Yeast Cells

Jakub Orzechowski Westholm, Susanna Tronnersjö, Niklas Nordberg, Ida Olsson, Jan Komorowski, Hans Ronne

published 21 Feb 2012

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A Novel Framework for the Comparative Analysis of Biological Networks

Roland A. Pache, Patrick Aloy

published 21 Feb 2012

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DNA Barcoding the Dioscorea in China, a Vital Group in the Evolution of Monocotyledon: Use of matK Gene for Species Discrimination

Xiao-Qin Sun, Ying-Jie Zhu, Jian-Lin Guo, Bin Peng, Ming-Ming Bai, Yue-Yu Hang

published 20 Feb 2012

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The Dispanins: A Novel Gene Family of Ancient Origin That Contains 14 Human Members

Markus Sällman Almén, Nathalie Bringeland, Robert Fredriksson, Helgi B. Schiöth

published 20 Feb 2012

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Independent Recruitment of a Flavin-Dependent Monooxygenase for Safe Accumulation of Sequestered Pyrrolizidine Alkaloids in Grasshoppers and Moths

Linzhu Wang, Till Beuerle, James Timbilla, Dietrich Ober

published 20 Feb 2012

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PrionHome: A Database of Prions and Other Sequences Relevant to Prion Phenomena

Djamel Harbi, Marimuthu Parthiban, Deena M. A. Gendoo, Sepehr Ehsani, Manish Kumar, Gerold Schmitt-Ulms, Ramanathan Sowdhamini, Paul M. Harrison

published 20 Feb 2012

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Optimizing a Massive Parallel Sequencing Workflow for Quantitative miRNA Expression Analysis

Francesca Cordero, Marco Beccuti, Maddalena Arigoni, Susanna Donatelli, Raffaele A. Calogero

published 20 Feb 2012

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