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Sequence analysis

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, [ ... ], Wen-Lian Hsu

Systematic Comparison of Three Methods for Fragmentation of Long-Range PCR Products for Next Generation Sequencing

Ellen Knierim, Barbara Lucke, [ ... ], Dominik Seelow

On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

Evolutionary Relationships of Microbial Aromatic Prenyltransferases

Tobias Bonitz, Vikram Alva, [ ... ], Lutz Heide

Interkingdom Gene Transfer of a Hybrid NPS/PKS from Bacteria to Filamentous Ascomycota

Daniel P. Lawrence, Scott Kroken, Barry M. Pryor, A. Elizabeth Arnold

A Conformational Switch in the Active Site of BT_2972, a Methyltransferase from an Antibiotic Resistant Pathogen B. thetaiotaomicron

Veerendra Kumar, J. Sivaraman

The C Allele of rs5743836 Polymorphism in the Human TLR9 Promoter Links IL-6 and TLR9 Up-Regulation and Confers Increased B-Cell Proliferation

Agostinho Carvalho, Nuno S. Osório, [ ... ], Fernando Rodrigues

Microarray-Based Transcriptomic Analysis of Differences between Long-Term Gregarious and Solitarious Desert Locusts

Liesbeth Badisco, Swidbert R. Ott, [ ... ], Jozef Vanden Broeck

hnRNP A1 and hnRNP F Modulate the Alternative Splicing of Exon 11 of the Insulin Receptor Gene

Indrani Talukdar, Supriya Sen, [ ... ], Nicholas J. G. Webster

The Putative Endoglucanase PcGH61D from Phanerochaete chrysosporium Is a Metal-Dependent Oxidative Enzyme that Cleaves Cellulose

Bjørge Westereng, Takuya Ishida, [ ... ], Mats Sandgren

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Brandi L. Cantarel, Alison R. Erickson, [ ... ], Robert L. Hettich

MetaBinG: Using GPUs to Accelerate Metagenomic Sequence Classification

Peng Jia, Liming Xuan, Lei Liu, Chaochun Wei

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

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