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Sequence analysis

A Public HTLV-1 Molecular Epidemiology Database for Sequence Management and Data Mining

Thessika Hialla Almeida Araujo, Leandro Inacio Souza-Brito, Pieter Libin, Koen Deforche, Dustin Edwards, Antonio Eduardo de Albuquerque-Junior, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Luiz Carlos Junior Alcantara

published 10 Sep 2012

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Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

Charles K. Lee, Craig W. Herbold, Shawn W. Polson, K. Eric Wommack, Shannon J. Williamson, Ian R. McDonald, S. Craig Cary

published 06 Sep 2012

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Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts

Emily S. Charlson, Kyle Bittinger, Jun Chen, Joshua M. Diamond, Hongzhe Li, Ronald G. Collman, Frederic D. Bushman

published 06 Sep 2012

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Transposable Elements in TDP-43-Mediated Neurodegenerative Disorders

Wanhe Li, Ying Jin, Lisa Prazak, Molly Hammell, Josh Dubnau

published 05 Sep 2012

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Protein Disorder and Short Conserved Motifs in Disordered Regions Are Enriched near the Cytoplasmic Side of Single-Pass Transmembrane Proteins

Ilias Stavropoulos, Nora Khaldi, Norman E. Davey, Kevin O’Brien, Finian Martin, Denis C. Shields

published 04 Sep 2012

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Identification and Sequence Analysis of Metazoan tRNA 3′-End Processing Enzymes tRNase Zs

Zhikang Wang, Jia Zheng, Xiaojie Zhang, Jingjing Peng, Jinyu Liu, Ying Huang

published 04 Sep 2012

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Implications of Pyrosequencing Error Correction for Biological Data Interpretation

Matthew G. Bakker, Zheng J. Tu, James M. Bradeen, Linda L. Kinkel

published 30 Aug 2012

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New Insights on the Sialidase Protein Family Revealed by a Phylogenetic Analysis in Metazoa

Edoardo Giacopuzzi, Roberto Bresciani, Roland Schauer, Eugenio Monti, Giuseppe Borsani

published 30 Aug 2012

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YY1-Binding Sites Provide Central Switch Functions in the PARP-1 Gene Expression Network

Martina Doetsch, Angela Gluch, Goran Poznanović, Juergen Bode, Melita Vidaković

published 28 Aug 2012

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Reverse Taxonomy for Elucidating Diversity of Insect-Associated Nematodes: A Case Study with Termites

Natsumi Kanzaki, Robin M. Giblin-Davis, Rudolf H. Scheffrahn, Hisatomo Taki, Alejandro Esquivel, Kerrie A. Davies, E. Allen Herre

published 28 Aug 2012

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Frequency Matrix Approach Demonstrates High Sequence Quality in Avian BARCODEs and Highlights Cryptic Pseudogenes

Mark Y. Stoeckle, Kevin C. R. Kerr

published 27 Aug 2012

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29 Mammalian Genomes Reveal Novel Exaptations of Mobile Elements for Likely Regulatory Functions in the Human Genome

Craig B. Lowe, David Haussler

published 27 Aug 2012

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Increasing Coverage of Transcription Factor Position Weight Matrices through Domain-level Homology

Brady Bernard, Vesteinn Thorsson, Hector Rovira, Ilya Shmulevich

published 27 Aug 2012

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