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Sequence analysis

Putative purine nucleoside interacting residues in the malaria parasite purine uptake transporter PfENT1 are critical for transporter function

Criselda Dillague, Myles H. Akabas

published 19 Dec 2023

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In silico analysis of TRPM4 variants of unknown clinical significance

Svetlana I. Tarnovskaya, Anna A. Kostareva, Boris S. Zhorov

published 15 Dec 2023

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The tubulin database: Linking mutations, modifications, ligands and local interactions

Izra Abbaali, Danny Truong, Shania Deon Day, Faliha Mushayeed, Bhargavi Ganesh, Nancy Haro-Ramirez, Juliet Isles, Hindol Nag, Catherine Pham, Priya Shah, Ishaan Tomar, Carolina Manel-Romero, Naomi S. Morrissette

published 08 Dec 2023

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Comparison of insect and human cytochrome b561 proteins: Insights into candidate ferric reductases in insects

Jessica D. Holst, Laura G. Murphy, Maureen J. Gorman, Emily J. Ragan

published 01 Dec 2023

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A taxonomic schema of potential pitfalls in clinical variant analysis based on real-world evidence

Adam Coovadia, Luigi Boccuto, Yenui Chang, Jane DeLuca

published 30 Nov 2023

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MORA and EnsembleTFpredictor: An ensemble approach to reveal functional transcription factor regulatory networks

Kevin Boyer, Louis Li, Tiandao Li, Bo Zhang, Guoyan Zhao

published 30 Nov 2023

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A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing

Per A. Adastra, Neva C. Durand, Namita Mitra, Saul Godinez Pulido, Ragini Mahajan, Alyssa Blackburn, Zane L. Colaric, Joshua W. M. Theisen, David Weisz, Olga Dudchenko, Andreas Gnirke, Suhas S. P. Rao, Parwinder Kaur, Erez Lieberman Aiden, Aviva Presser Aiden

published 30 Nov 2023

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Portable BLAST-like algorithm library and its implementations for command line, Python, and R

Steven Schmid, Aditya Jeevannavar, Timothy R. Julian, Manu Tamminen

published 30 Nov 2023

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SAKE: Strobemer-assisted k-mer extraction

Miika Leinonen, Leena Salmela

published 29 Nov 2023

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Improving genome-wide mapping of nucleosomes in Trypanosome cruzi.

Paula Beati, Milena Massimino Stepñicka, Salomé C. Vilchez Larrea, Pablo Smircich, Guillermo D. Alonso, Josefina Ocampo

published 21 Nov 2023

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Exploration of the B3 transcription factor superfamily in Aquilaria sinensis reveal their involvement in seed recalcitrance and agarwood formation

Yue Jin, Lin Zeng, Mengjun Xiao, Yanan Feng, Zhihui Gao, Jianhe Wei

published 16 Nov 2023

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DNA barcoding as new diagnostic tool to lethal plant poisoning in herbivorous mammals

Sandra Schweikle, Annette Häser, Sascha Wetters, Moses Raisin, Maica Greiner, Kerstin Rigbers, Ulrike Fischer, Klaus Pietsch, Michael Suntz, Peter Nick

published 15 Nov 2023

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A qPCR assay for the rapid and specific detection of Shining ram’s-horn snail (Segmentina nitida) eDNA from Stodmarsh National Nature Reserve, UK

Helen C. Rees, Mags E. Cousins, Claire A. Baker, Ben C. Maddison

published 15 Nov 2023

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