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Sequence analysis

A taxonomic schema of potential pitfalls in clinical variant analysis based on real-world evidence

Adam Coovadia, Luigi Boccuto, Yenui Chang, Jane DeLuca

MORA and EnsembleTFpredictor: An ensemble approach to reveal functional transcription factor regulatory networks

Kevin Boyer, Louis Li, [ ... ], Guoyan Zhao

A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing

Per A. Adastra, Neva C. Durand, [ ... ], Aviva Presser Aiden

Portable BLAST-like algorithm library and its implementations for command line, Python, and R

Steven Schmid, Aditya Jeevannavar, Timothy R. Julian, Manu Tamminen

SAKE: Strobemer-assisted k-mer extraction

Miika Leinonen, Leena Salmela

Improving genome-wide mapping of nucleosomes in Trypanosome cruzi.

Paula Beati, Milena Massimino Stepñicka, [ ... ], Josefina Ocampo

Exploration of the B3 transcription factor superfamily in Aquilaria sinensis reveal their involvement in seed recalcitrance and agarwood formation

Yue Jin, Lin Zeng, [ ... ], Jianhe Wei

DNA barcoding as new diagnostic tool to lethal plant poisoning in herbivorous mammals

Sandra Schweikle, Annette Häser, [ ... ], Peter Nick

A qPCR assay for the rapid and specific detection of Shining ram’s-horn snail (Segmentina nitida) eDNA from Stodmarsh National Nature Reserve, UK

Helen C. Rees, Mags E. Cousins, Claire A. Baker, Ben C. Maddison

The Azotobacter vinelandii AlgU regulon during vegetative growth and encysting conditions: A proteomic approach

Sangita Chowdhury-Paul, Iliana C. Martínez-Ortíz, [ ... ], Cinthia Núñez

Characterization and expression analysis of SnRK2, PYL, and ABF/ AREB/ ABI5 gene families in sweet potato

Sarah R. Mathura, Fedora Sutton, Valerie Bowrin

De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis

Sen Liu, Gongxiu He, [ ... ], Can Xiao

Rapid and collective determination of the complete “hot-spring frog” mitochondrial genome containing long repeat regions using Nanopore sequencing

Yuka Asaeda, Kento Shiraga, [ ... ], Takeshi Igawa

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